PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2qkoA_

Fold library id	PDB Header	Molecule	Title
c2qkoA_	PDB header: transcription	Chain: A: PDB Molecule: possible transcriptional regulator, tetr family	PDBTitle: crystal structure of transcriptional regulator rha063992 from rhodococcus sp. rha1

Links to external resources
Added to library: Tue Mar 16 14:02:55 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P E R R A A L V N A A I E V L A R E G A R G L T F R A V D V E A N V P K G T A S N Y F P S R D D L F D Q V G K R I H E R L N L E L A I E Y X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T T
S S S T T T
S
G G G T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q G L F G R I T R D R T G Y L A L Q E L R L E A V R R P E L R T T L T R T I S E N L K R D I G F H L D S G L P G D R S T V L X L Y L A X N A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T T T T
T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . .

Sequence L I V E H L T L P G V L E G V D T E R L V A D L V T R A V A T P D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S T T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	E	R	R	A	A	L	V	N	A	A	I	E	V	L	A	R	E	G	A	R	G	L	T	F	R	A	V	D	V	E	A	N	V	P	K	G	T	A	S	N	Y	F	P	S	R	D	D	L	F	D	Q	V	G	K	R	I	H	E	R	L	N	L	E	L	A	I	E	Y	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T		T	T	T										S	S	S	T	T	T							S													G	G	G	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	G	L	F	G	R	I	T	R	D	R	T	G	Y	L	A	L	Q	E	L	R	L	E	A	V	R	R	P	E	L	R	T	T	L	T	R	T	I	S	E	N	L	K	R	D	I	G	F	H	L	D	S	G	L	P	G	D	R	S	T	V	L	X	L	Y	L	A	X	N	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T	T	T	T	T															T	T																											T		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Sequence	L	I	V	E	H	L	T	L	P	G	V	L	E	G	V	D	T	E	R	L	V	A	D	L	V	T	R	A	V	A	T	P	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									G	G	G	S	T	T															S