PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3ccyA_

Fold library id	PDB Header	Molecule	Title
c3ccyA_	PDB header: transcription regulator	Chain: A: PDB Molecule: putative tetr-family transcriptional regulator;	PDBTitle: crystal structure of a tetr-family transcriptional2 regulator from bordetella parapertussis 12822

Links to external resources
Added to library: Tue Mar 16 12:38:57 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y E N I R D T I I E R A A A X F A R Q G Y S E T S I G D I A R A C E C S K S R L Y H Y F D S K E A V L R D X L T T H V D S L L E R C R Q V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T T S
T T
G G G G T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y G S N E P K T R F L Q I V K L F L E I Y A T S R D R H V V X L T C L D A L P E D Q R K A L I A K Q R E L I A Y V R D A L L Q L R P D X A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
G G G S
S
G G G T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . .

Sequence N R T L A H V D T X L F F G X I N W T Y T W Y K A D G S V S P D A L A E R T V Q L F L D G Y L N L L S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G T
T T S S S
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	E	N	I	R	D	T	I	I	E	R	A	A	A	X	F	A	R	Q	G	Y	S	E	T	S	I	G	D	I	A	R	A	C	E	C	S	K	S	R	L	Y	H	Y	F	D	S	K	E	A	V	L	R	D	X	L	T	T	H	V	D	S	L	L	E	R	C	R	Q	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T																T		T	T	T	S									T	T			G	G	G	G	T	T	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	G	S	N	E	P	K	T	R	F	L	Q	I	V	K	L	F	L	E	I	Y	A	T	S	R	D	R	H	V	V	X	L	T	C	L	D	A	L	P	E	D	Q	R	K	A	L	I	A	K	Q	R	E	L	I	A	Y	V	R	D	A	L	L	Q	L	R	P	D	X	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T		S																															G	G	G	S		S																										G	G	G	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Sequence	N	R	T	L	A	H	V	D	T	X	L	F	F	G	X	I	N	W	T	Y	T	W	Y	K	A	D	G	S	V	S	P	D	A	L	A	E	R	T	V	Q	L	F	L	D	G	Y	L	N	L	L	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		G	G	G	G	T			T	T	S	S	S																	G	G	G