PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2gfnA_

Fold library id	PDB Header	Molecule	Title
c2gfnA_	PDB header: transcription	Chain: A: PDB Molecule: hth-type transcriptional regulator pksa related	PDBTitle: crystal structure of hth-type transcriptional regulator2 pksa related protein from rhodococcus sp. rha1

Links to external resources
Added to library: Tue Mar 16 12:52:05 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I V D H D E R R R A L A D A V L A L I A R E G I S A V T T R A V A E E S G W S T G V L N H Y F G S R H E L L L A A L R R A G D I Q G D R Y R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S S
T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T I L D E E G A G P I E K L R N I T A S I L P L D E R R L A X T R V F L F F Y A E G T A R G E I A A F L A R W R G V V R E S V V A A Q R E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T S
S
S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . .

Sequence T V S T D L D A D A V T V A L V A L T D G L A L Q A I L D P V V X K A I S A E D A A A R C V D A A V R R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T S
T T
T S T T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	V	D	H	D	E	R	R	R	A	L	A	D	A	V	L	A	L	I	A	R	E	G	I	S	A	V	T	T	R	A	V	A	E	E	S	G	W	S	T	G	V	L	N	H	Y	F	G	S	R	H	E	L	L	L	A	A	L	R	R	A	G	D	I	Q	G	D	R	Y	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								G	G	G											S	S									T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	I	L	D	E	E	G	A	G	P	I	E	K	L	R	N	I	T	A	S	I	L	P	L	D	E	R	R	L	A	X	T	R	V	F	L	F	F	Y	A	E	G	T	A	R	G	E	I	A	A	F	L	A	R	W	R	G	V	V	R	E	S	V	V	A	A	Q	R	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T		T	T													T	T	S			S																				S																									T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Sequence	T	V	S	T	D	L	D	A	D	A	V	T	V	A	L	V	A	L	T	D	G	L	A	L	Q	A	I	L	D	P	V	V	X	K	A	I	S	A	E	D	A	A	A	R	C	V	D	A	A	V	R	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S		T	T	S																					T	T									T	S	T	T											T