PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1jumB_

Fold library id	PDB Header	Molecule	Title
c1jumB_	PDB header: transcription	Chain: B: PDB Molecule: hypothetical transcriptional regulator in qaca	PDBTitle: crystal structure of the multidrug binding transcriptional2 repressor qacr bound to the natural drug berberine

Links to external resources
Added to library: Tue Mar 16 12:46:37 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N L K D K I L G V A K E L F I K N G Y N A T T T G E I V K L S E S S K G N L Y Y H F K T K E N L F L E I L N I E E S K W Q E Q W K K E Q I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T T S
T T
S
S T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A K T N R E K F Y L Y N E L S L T T E Y Y Y P L Q N A I I E F Y T E Y Y K T N S I N E K M N K L E N K Y I D A Y H V I F K E G N L N G E W S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S G G G T T T T S S T T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . .

Sequence I N D V N A V S K I A A N A V N G I V T F T H E Q N I N E R I K L M N K F S Q I F L N G L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	L	K	D	K	I	L	G	V	A	K	E	L	F	I	K	N	G	Y	N	A	T	T	T	G	E	I	V	K	L	S	E	S	S	K	G	N	L	Y	Y	H	F	K	T	K	E	N	L	F	L	E	I	L	N	I	E	E	S	K	W	Q	E	Q	W	K	K	E	Q	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T		T	T	T	S									T	T										S		S																								T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	K	T	N	R	E	K	F	Y	L	Y	N	E	L	S	L	T	T	E	Y	Y	Y	P	L	Q	N	A	I	I	E	F	Y	T	E	Y	Y	K	T	N	S	I	N	E	K	M	N	K	L	E	N	K	Y	I	D	A	Y	H	V	I	F	K	E	G	N	L	N	G	E	W	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S																S	S	S	G	G	G										T	T	T	T	S	S	T	T												T														S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Sequence	I	N	D	V	N	A	V	S	K	I	A	A	N	A	V	N	G	I	V	T	F	T	H	E	Q	N	I	N	E	R	I	K	L	M	N	K	F	S	Q	I	F	L	N	G	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S																			T	T	T	T	S