PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1pb6D_

Fold library id	PDB Header	Molecule	Title
c1pb6D_	PDB header: transcription	Chain: D: PDB Molecule: hypothetical transcriptional regulator ycdc;	PDBTitle: crystal structure of hypothetical transcriptional regulator ycdc

Links to external resources
Added to library: Tue Mar 16 13:28:42 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A V S A K K K A I L S A A L D T F S Q F G F H G T R L E Q I A E L A G V S K T N L L Y Y F P S K E A L Y I A V L R Q I L D I W L A P L K A F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
S S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R E D F A P L A A I K E Y I R L K L E V S R D Y P Q A S R L F C M E M L A G A P L L M D E L T G D L K A L I D E K S A L I A G W V K S G K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T
T T T T T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . .

Sequence A P I D P Q H L I F M I W A S T Q H Y A D F A P Q V E A V T G A T L R D E V F F N Q T V E N V Q R I I I E G I R P R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T S
T T S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	V	S	A	K	K	K	A	I	L	S	A	A	L	D	T	F	S	Q	F	G	F	H	G	T	R	L	E	Q	I	A	E	L	A	G	V	S	K	T	N	L	L	Y	Y	F	P	S	K	E	A	L	Y	I	A	V	L	R	Q	I	L	D	I	W	L	A	P	L	K	A	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																			T	S									S	S	S																	T					T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	E	D	F	A	P	L	A	A	I	K	E	Y	I	R	L	K	L	E	V	S	R	D	Y	P	Q	A	S	R	L	F	C	M	E	M	L	A	G	A	P	L	L	M	D	E	L	T	G	D	L	K	A	L	I	D	E	K	S	A	L	I	A	G	W	V	K	S	G	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S																																	T	T		T	T	T						T																			T	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Sequence	A	P	I	D	P	Q	H	L	I	F	M	I	W	A	S	T	Q	H	Y	A	D	F	A	P	Q	V	E	A	V	T	G	A	T	L	R	D	E	V	F	F	N	Q	T	V	E	N	V	Q	R	I	I	I	E	G	I	R	P	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S																				T									S			T	T	S																				S