PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3dpjB_

Fold library id	PDB Header	Molecule	Title
c3dpjB_	PDB header: dna binding protein	Chain: B: PDB Molecule: transcription regulator, tetr family;	PDBTitle: the crystal structure of a tetr transcription regulator2 from silicibacter pomeroyi dss

Links to external resources
Added to library: Tue Mar 16 12:58:48 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V Q A Q T R D Q I V A A A D E L F Y R Q G F A Q T S F V D I S A A V G I S R G N F Y Y H F K T K D E I L A E V I R L R L A R T A Q X L A D W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S T T
T
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q G T G D S P R A R I A S F I D L X I X N R A K I T R Y G C P V G S L C T E L S K L D H A A Q G Q A N G L F T L F R D W L Q R Q F A E A G C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S S T
T T T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190

Sequence T T E A P A L A X H L L A R S Q G A A T L A Q S F H D E G F L R S E V A D X H R W L D N T L P X T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S T T
T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	Q	A	Q	T	R	D	Q	I	V	A	A	A	D	E	L	F	Y	R	Q	G	F	A	Q	T	S	F	V	D	I	S	A	A	V	G	I	S	R	G	N	F	Y	Y	H	F	K	T	K	D	E	I	L	A	E	V	I	R	L	R	L	A	R	T	A	Q	X	L	A	D	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T																			S	T	T											T								T	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	G	T	G	D	S	P	R	A	R	I	A	S	F	I	D	L	X	I	X	N	R	A	K	I	T	R	Y	G	C	P	V	G	S	L	C	T	E	L	S	K	L	D	H	A	A	Q	G	Q	A	N	G	L	F	T	L	F	R	D	W	L	Q	R	Q	F	A	E	A	G	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T		S	S	S														T										T	T										T	T		T	T																							S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Sequence	T	T	E	A	P	A	L	A	X	H	L	L	A	R	S	Q	G	A	A	T	L	A	Q	S	F	H	D	E	G	F	L	R	S	E	V	A	D	X	H	R	W	L	D	N	T	L	P	X	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S																						T	T																T	T	T	T