PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3qkxB_

Fold library id	PDB Header	Molecule	Title
c3qkxB_	PDB header: transcription regulator	Chain: B: PDB Molecule: uncharacterized hth-type transcriptional regulator hi_0893;	PDBTitle: crystal structure of a tetr-family transcriptional regulator (hi0893)2 from haemophilus influenzae rd at 2.35 a resolution

Links to external resources
Added to library: Sat Mar 5 10:29:41 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D L A E Q I F S A T D R L X A R E G L N Q L S X L K L A K E A N V A A G T I Y L Y F K N K D E L L E Q F A H R V F S X F X A T L E K D F D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
G G G
T T S
S S T T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T K P F F E Q Y R Q X W K N I W Y F L Q E N P T I L S N L K Q Y E S L P N F K D I C K N I K N C R W D L F C H Q A Q K A G L L A E L S E D I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T S T T T
S
T T
B
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 .

Sequence L F L L S L K T A I N L A S D A K F I D F D L K P E I L E S V I E R S W R A I Q K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T B

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	L	A	E	Q	I	F	S	A	T	D	R	L	X	A	R	E	G	L	N	Q	L	S	X	L	K	L	A	K	E	A	N	V	A	A	G	T	I	Y	L	Y	F	K	N	K	D	E	L	L	E	Q	F	A	H	R	V	F	S	X	F	X	A	T	L	E	K	D	F	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S		G	G	G										T	T	S										S	S																						T	T			T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	K	P	F	F	E	Q	Y	R	Q	X	W	K	N	I	W	Y	F	L	Q	E	N	P	T	I	L	S	N	L	K	Q	Y	E	S	L	P	N	F	K	D	I	C	K	N	I	K	N	C	R	W	D	L	F	C	H	Q	A	Q	K	A	G	L	L	A	E	L	S	E	D	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S																															T	T	S	T	T							T			S													T	T		B		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Sequence	L	F	L	L	S	L	K	T	A	I	N	L	A	S	D	A	K	F	I	D	F	D	L	K	P	E	I	L	E	S	V	I	E	R	S	W	R	A	I	Q	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T								S																								T	T	B