Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0ACU0
DateThu Jan 5 11:19:02 GMT 2012
Unique Job ID27c95308812d4a7b

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1t33B_
Top template information
PDB header:transcription
Chain: B: PDB Molecule:putative transcriptional repressor (tetr/acrr family);
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional repressor (tetr/acrr family) from salmonella3 typhimurim lt2
Confidence and coverage
Confidence:100.0% Coverage: 96%
214 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIAAITYYFGSKEDLYL
Secondary structure 
















SS confidence 



























































Disorder  ??????????

















































Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.........120
Sequence  ACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTVNLSK
Secondary structure 










SS confidence 



























































Disorder 






















?????????



























Disorder confidence 



























































 
   .........130.........140.........150.........160.........170.........180
Sequence  FISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDANDTRMILHTHALIGEILAFR
Secondary structure 







SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........190.........200.........210.........220...
Sequence  LGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGLSQRSL
Secondary structure 











SS confidence 










































Disorder 










???
























????
Disorder confidence 










































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1t33 chain B

3D model

Region: 7 - 220
Aligned: 214
Modelled: 214
Confidence: 100.0%
Identity: 86%
PDB header:transcription
Chain: B: PDB Molecule:putative transcriptional repressor (tetr/acrr family);
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional repressor (tetr/acrr family) from salmonella3 typhimurim lt2

Phyre2

PDB 3e7q chain B

3D model

Region: 1 - 221
Aligned: 204
Modelled: 211
Confidence: 99.9%
Identity: 17%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: the crystal structure of the putative transcriptional regulator from2 pseudomonas aeruginosa pao1

Phyre2

PDB 3bhq chain B

3D model

Region: 8 - 218
Aligned: 198
Modelled: 211
Confidence: 99.9%
Identity: 15%
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a putative tetr-family transcriptional regulator2 (mlr_4833) from mesorhizobium loti maff303099 at 1.54 a resolution

Phyre2

PDB 2fbq chain A

3D model

Region: 10 - 222
Aligned: 206
Modelled: 213
Confidence: 99.9%
Identity: 15%
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of transcriptional regulator pa3006

Phyre2

PDB 1pb6 chain D

3D model

Region: 11 - 221
Aligned: 194
Modelled: 211
Confidence: 99.9%
Identity: 23%
PDB header:transcription
Chain: D: PDB Molecule:hypothetical transcriptional regulator ycdc;
PDBTitle: crystal structure of hypothetical transcriptional regulator ycdc

Phyre2

PDB 3gzi chain A

3D model

Region: 1 - 218
Aligned: 198
Modelled: 205
Confidence: 99.9%
Identity: 17%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution

Phyre2

PDB 2qco chain A

3D model

Region: 5 - 220
Aligned: 201
Modelled: 207
Confidence: 99.9%
Identity: 13%
PDB header:transcription
Chain: A: PDB Molecule:cmer;
PDBTitle: crystal structure of the transcriptional regulator cmer from2 campylobacter jejuni

Phyre2

PDB 3eup chain A

3D model

Region: 6 - 221
Aligned: 193
Modelled: 205
Confidence: 99.9%
Identity: 13%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of the transcriptional regulator, tetr family2 from cytophaga hutchinsonii

Phyre2

PDB 2zb9 chain A

3D model

Region: 7 - 221
Aligned: 184
Modelled: 199
Confidence: 99.8%
Identity: 14%
PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of tetr family transcription regulator2 sco0332

Phyre2

PDB 3nrg chain A

3D model

Region: 10 - 221
Aligned: 200
Modelled: 201
Confidence: 99.8%
Identity: 15%
PDB header:transcription
Chain: A: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: crystal structure of a tetr family transcriptional regulator2 (caur_2714) from chloroflexus aurantiacus j-10-fl at 2.56 a3 resolution

Phyre2

PDB 2qtq chain B

3D model

Region: 13 - 220
Aligned: 194
Modelled: 198
Confidence: 99.8%
Identity: 17%
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a predicted dna-binding transcriptional regulator2 (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 a3 resolution

Phyre2

PDB 1rkt chain A

3D model

Region: 3 - 217
Aligned: 199
Modelled: 203
Confidence: 99.8%
Identity: 14%
PDB header:transcription
Chain: A: PDB Molecule:protein yfir;
PDBTitle: crystal structure of yfir, a putative transcriptional regulator from2 bacillus subtilis

Phyre2

PDB 2hyj chain A

3D model

Region: 8 - 212
Aligned: 186
Modelled: 194
Confidence: 99.8%
Identity: 15%
PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: the crystal structure of a tetr-family transcriptional regulator from2 streptomyces coelicolor

Phyre2

PDB 1zkg chain B

3D model

Region: 12 - 220
Aligned: 197
Modelled: 197
Confidence: 99.8%
Identity: 15%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator, tetr family (tm1030)2 from thermotoga maritima at 2.30 a resolution

Phyre2

PDB 3lwj chain A

3D model

Region: 9 - 218
Aligned: 188
Modelled: 196
Confidence: 99.8%
Identity: 17%
PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 (yp_752756.1) from syntrophomonas wolfei str. goettingen at 2.07 a3 resolution

Phyre2

PDB 2pbx chain B

3D model

Region: 1 - 214
Aligned: 192
Modelled: 203
Confidence: 99.8%
Identity: 15%
PDB header:transcription
Chain: B: PDB Molecule:hemagglutinin/protease regulatory protein;
PDBTitle: vibrio cholerae hapr

Phyre2

PDB 3pas chain A

3D model

Region: 8 - 221
Aligned: 188
Modelled: 195
Confidence: 99.8%
Identity: 14%
PDB header:transcription regulator
Chain: A: PDB Molecule:tetr family transcription regulator;
PDBTitle: crystal structure of a tetr family transcription regulator (maqu_1417)2 from marinobacter aquaeolei vt8 at 1.90 a resolution

Phyre2

PDB 3qbm chain A

3D model

Region: 8 - 219
Aligned: 190
Modelled: 201
Confidence: 99.8%
Identity: 17%
PDB header:transcription regulator
Chain: A: PDB Molecule:tetr transcriptional regulator;
PDBTitle: crystal structure of a tetr transcriptional regulator (caur_2221) from2 chloroflexus aurantiacus j-10-fl at 1.80 a resolution

Phyre2

PDB 3lsj chain A

3D model

Region: 3 - 222
Aligned: 200
Modelled: 215
Confidence: 99.8%
Identity: 16%
PDB header:transcription
Chain: A: PDB Molecule:dest;
PDBTitle: crystal structure of dest in complex with palmitoyl-coa

Phyre2

PDB 2zcx chain A

3D model

Region: 9 - 219
Aligned: 201
Modelled: 211
Confidence: 99.8%
Identity: 12%
PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr family transcriptional regulator2 sco7815

Phyre2
1

c1t33B_
2

c3e7qB_
3

c3bhqB_
4

c2fbqA_
5

c1pb6D_
6

c3gziA_
7

c2qcoA_
8

c3eupA_
9

c2zb9A_
10

c3nrgA_
11

c2qtqB_
12

c1rktA_
13

c2hyjA_
14

c1zkgB_
15

c3lwjA_
16

c2pbxB_
17

c3pasA_
18

c3qbmA_
19

c3lsjA_
20

c2zcxA_
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



53



54



55



56



57



58



59



60



61



62



63



64



65



66



67



68



69



70



71



72



73



74



75



76



77



78



79



80



81



82



83



84



85



86



87



88



89



90



91



92



93



94



95



96



97



98



99



100



101



102



103



104



105



106



107



108



109



110



111



112



113



114



115



116



117



118



119



120



121



122



123



124



125



126



127



128



129



130



131



132



133



134



135



136



137



138



139



140



141



142



143



144



145



146



147



148



149



150



151



152



153



154



155



156



157



158



159



160



161



162



163



164



165



166



167



168



169



170



171



172



173



174



175



176



177



178



179



180



181



182



183



184



185



186



187



188



189



190



191



192



193



194



195



196



197



198



199



200



201



202



203



204



205



206



207



208



209



210



211



212



213



214



215



216



217



218



219



220



221



222



223



224



225



226



227



228



229



230



231



232



233



234



235



236



237



238



239



240



241



242



243



244



245



246



247



248



249



250



251



252



253



254



255



256



257



258



259



260



261



262



263



264



265



266



267



268



269



270



271



272



273



274



275



276



277



278



279



280



281



282



283



284



285



286



287



288



289



290



291



292



293



294



295



296



297



298



299



300



301



302



303



304



305



306



307



308



309



310



311



312



313



314



315



316



317



318



319



320



321



322



323



324



325



326



327



328



329



330



331



332



333



334



335



336



337



338



339



340



341



342



343



344



345



346



347



348



349



350



351



352



353



354



355



356



357



358



359



360



361



362



363



364



365



366



367



368



369



370



371



372



373



374



375



376



377



378



379



380



381



382



383



384



385



386



387



388



389



390



391



392



393



394



395



396



397



398



399



400



401



402



403



404



405



406



407



408



409



410



411



412



413



414



415



416



417



418



419



420



421



422



423



424



425



426



427



428



429



430



431



432



433



434



435



436



437



438



439



440



441



442



443



444



445



446



447



448



449



450



451



452



453



454



455



456



457



458



459



460



461



462



463



464



465



466



467



468



469



470



471



472



473



474



475



476



477



478



479



480



481



482



483



484



485



486



487



488



489



490



491



492



493



494



495



496



497



498



499






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1t33B_



100.0 86 PDB header:transcription
Chain: B: PDB Molecule:putative transcriptional repressor (tetr/acrr family);
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional repressor (tetr/acrr family) from salmonella3 typhimurim lt2
2c3e7qB_



99.9 17 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: the crystal structure of the putative transcriptional regulator from2 pseudomonas aeruginosa pao1
3c3bhqB_



99.9 15 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a putative tetr-family transcriptional regulator2 (mlr_4833) from mesorhizobium loti maff303099 at 1.54 a resolution
4c2fbqA_



99.9 15 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of transcriptional regulator pa3006
5c1pb6D_



99.9 23 PDB header:transcription
Chain: D: PDB Molecule:hypothetical transcriptional regulator ycdc;
PDBTitle: crystal structure of hypothetical transcriptional regulator ycdc
6c3gziA_



99.9 17 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution
7c2qcoA_



99.9 13 PDB header:transcription
Chain: A: PDB Molecule:cmer;
PDBTitle: crystal structure of the transcriptional regulator cmer from2 campylobacter jejuni
8c3eupA_



99.9 13 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of the transcriptional regulator, tetr family2 from cytophaga hutchinsonii
9c2zb9A_



99.8 14 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of tetr family transcription regulator2 sco0332
10c3nrgA_



99.8 15 PDB header:transcription
Chain: A: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: crystal structure of a tetr family transcriptional regulator2 (caur_2714) from chloroflexus aurantiacus j-10-fl at 2.56 a3 resolution
11c2qtqB_



99.8 17 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a predicted dna-binding transcriptional regulator2 (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 a3 resolution
12c1rktA_



99.8 14 PDB header:transcription
Chain: A: PDB Molecule:protein yfir;
PDBTitle: crystal structure of yfir, a putative transcriptional regulator from2 bacillus subtilis
13c2hyjA_



99.8 15 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: the crystal structure of a tetr-family transcriptional regulator from2 streptomyces coelicolor
14c1zkgB_



99.8 15 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator, tetr family (tm1030)2 from thermotoga maritima at 2.30 a resolution
15c3lwjA_



99.8 17 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 (yp_752756.1) from syntrophomonas wolfei str. goettingen at 2.07 a3 resolution
16c2pbxB_



99.8 15 PDB header:transcription
Chain: B: PDB Molecule:hemagglutinin/protease regulatory protein;
PDBTitle: vibrio cholerae hapr
17c3pasA_



99.8 14 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr family transcription regulator;
PDBTitle: crystal structure of a tetr family transcription regulator (maqu_1417)2 from marinobacter aquaeolei vt8 at 1.90 a resolution
18c3qbmA_



99.8 17 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr transcriptional regulator;
PDBTitle: crystal structure of a tetr transcriptional regulator (caur_2221) from2 chloroflexus aurantiacus j-10-fl at 1.80 a resolution
19c3lsjA_



99.8 16 PDB header:transcription
Chain: A: PDB Molecule:dest;
PDBTitle: crystal structure of dest in complex with palmitoyl-coa
20c2zcxA_



99.8 12 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr family transcriptional regulator2 sco7815
21c3mvpA_



not modelled 99.8 18 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr/acrr transcriptional regulator;
PDBTitle: the crystal structure of a tetr/acrr transcriptional regulator from2 streptococcus mutans to 1.85a
22c3on2C_



not modelled 99.8 16 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: structure of a protein with unknown function from rhodococcus sp. rha1
23c2iaiA_



not modelled 99.8 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative transcriptional regulator sco3833;
PDBTitle: crystal structure of sco3833, a member of the tetr transcriptional2 regulator family from streptomyces coelicolor a3
24c3rh2A_



not modelled 99.8 15 PDB header:dna binding protein
Chain: A: PDB Molecule:hypothetical tetr-like transcriptional regulator;
PDBTitle: crystal structure of a hypothetical tetr-like transcriptional2 regulator (sama_0099) from shewanella amazonensis sb2b at 2.42 a3 resolution
25c1jumB_



not modelled 99.8 16 PDB header:transcription
Chain: B: PDB Molecule:hypothetical transcriptional regulator in qaca
PDBTitle: crystal structure of the multidrug binding transcriptional2 repressor qacr bound to the natural drug berberine
26c2f07A_



not modelled 99.8 13 PDB header:transcription
Chain: A: PDB Molecule:yvdt;
PDBTitle: crystal structure of yvdt from bacillus subtilis
27c3dewA_



not modelled 99.8 19 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the structure of a putative tetr family transcriptional regulator from2 geobacter sulfurreducens pca.
28c2g7sA_



not modelled 99.8 13 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of transcriptional regulator, tetr family, from2 agrobacterium tumefaciens
29c2nx4A_



not modelled 99.8 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:transcriptional regulator, tetr family protein;
PDBTitle: the crystal structure of athe putative tetr-family transcriptional2 regulator rha06780 from rhodococcus sp. rha1.
30c2rasB_



not modelled 99.8 19 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a putative tetr/acrr family transcriptional2 regulator (saro_0558) from novosphingobium aromaticivorans dsm at3 1.80 a resolution
31c2raeA_



not modelled 99.8 13 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, acrr family protein;
PDBTitle: crystal structure of a tetr/acrr family transcriptional regulator from2 rhodococcus sp. rha1
32c3g7rB_



not modelled 99.8 18 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of sco4454, a tetr-family transcriptional2 regulator from streptomyces coelicolor
33c3f0cA_



not modelled 99.8 16 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator from cytophaga2 hutchinsonii atcc 33406
34c2uxoB_



not modelled 99.8 17 PDB header:transcription
Chain: B: PDB Molecule:hth-type transcriptional regulator ttgr;
PDBTitle: ttgr in complex with tetracycline
35c3ccyA_



not modelled 99.8 13 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of a tetr-family transcriptional regulator from2 bordetella parapertussis 12822
36c3ppbB_



not modelled 99.8 14 PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr family transcription regulator;
PDBTitle: crystal structure of a putative tetr family transcription regulator2 (shew_3104) from shewanella sp. pv-4 at 2.10 a resolution
37c3dcfB_



not modelled 99.8 21 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator of the tetr/acrr
PDBTitle: crystal structure of transcriptional regulator of the2 tetr/acrr family (yp_290855.1) from thermobifida fusca yx-3 er1 at 2.50 a resolution
38c1ui6B_



not modelled 99.8 16 PDB header:antibiotic
Chain: B: PDB Molecule:a-factor receptor homolog;
PDBTitle: crystal structure of gamma-butyrolactone receptor (arpa-like protein)
39c2fq4A_



not modelled 99.8 16 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of the transcriptional regulator (tetr family)2 from bacillus cereus
40c1vi0B_



not modelled 99.8 17 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator
41c3npiB_



not modelled 99.8 15 PDB header:gene regulation
Chain: B: PDB Molecule:tetr family regulatory protein;
PDBTitle: crystal structure of a tetr family regulatory protein (dip1788) from2 corynebacterium diphtheriae at 2.96 a resolution
42c1u9nA_



not modelled 99.8 13 PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional repressor ethr;
PDBTitle: crystal structure of the transcriptional regulator ethr in2 a ligand bound conformation opens therapeutic perspectives3 against tuberculosis and leprosy
43c3mnlA_



not modelled 99.8 16 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulatory protein (probably tetr-family);
PDBTitle: the crystal structure of kstr (rv3574) from mycobacterium tuberculosis2 h37rv
44c3anpD_



not modelled 99.8 16 PDB header:transcription
Chain: D: PDB Molecule:transcriptional repressor, tetr family;
PDBTitle: crystal structure of thermus thermophilus fadr, a tetr familly2 transcriptional repressor, in complex with lauroyl-coa.
45c2hytA_



not modelled 99.8 19 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of a tetr-family transcriptional regulator (eca1819)2 from pectobacterium atrosepticum at 1.64 a resolution
46c3himA_



not modelled 99.8 21 PDB header:transcription regulator
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of a bacterial regulatory protein in the tetr2 family from rhodococcus rha1 to 2.2a
47c2id3A_



not modelled 99.8 16 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator sco5951 from2 streptomyces coelicolor a3(2)
48c2genA_



not modelled 99.8 14 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a probable2 transcriptional regulator from pseudomonas aeruginosa pao1
49c3c07B_



not modelled 99.8 19 PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of a tetr family transcriptional regulator from2 streptomyces coelicolor a3(2)
50c3bjbE_



not modelled 99.8 15 PDB header:transcription regulator
Chain: E: PDB Molecule:probable transcriptional regulator, tetr family protein;
PDBTitle: crystal structure of a tetr transcriptional regulator from rhodococcus2 sp. rha1
51c2np5A_



not modelled 99.8 16 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator (rha1_ro04179) from2 rhodococcus sp. rha1.
52c3nnrA_



not modelled 99.8 10 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a tetr-family transcriptional regulator2 (maqu_3571) from marinobacter aquaeolei vt8 at 2.49 a resolution
53c3cwrA_



not modelled 99.8 14 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator of tetr2 family (yp_425770.1) from rhodospirillum rubrum atcc 111703 at 1.50 a resolution
54c3bruA_



not modelled 99.8 17 PDB header:transcription
Chain: A: PDB Molecule:regulatory protein, tetr family;
PDBTitle: crystal structure of regulatory protein tetr from rhodobacter2 sphaeroides
55c2wuiA_



not modelled 99.8 14 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of mexz, a key repressor responsible for2 antibiotic resistance in pseudomonas aeruginosa.
56c3s5rA_



not modelled 99.8 18 PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional regulator tetr family;
PDBTitle: crystal structure of a putative transcriptional regulator of the tetr2 family (syn_02108) from syntrophus aciditrophicus at 2.60 a3 resolution
57c3on4D_



not modelled 99.8 20 PDB header:transcription
Chain: D: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of tetr transcriptional regulator from legionella2 pneumophila
58c2o7tA_



not modelled 99.8 13 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a tetr family transcriptional regulator2 (ncgl1578, cgl1640) from corynebacterium glutamicum at 2.10 a3 resolution
59c2qibA_



not modelled 99.8 17 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr-family transcriptional regulator from2 streptomyces coelicolor
60c2gfnA_



not modelled 99.8 16 PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator pksa related protein;
PDBTitle: crystal structure of hth-type transcriptional regulator pksa related2 protein from rhodococcus sp. rha1
61c2g3bB_



not modelled 99.8 16 PDB header:transcription
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 from rhodococcus sp.
62c3geuC_



not modelled 99.8 12 PDB header:cell adhesion
Chain: C: PDB Molecule:intercellular adhesion protein r;
PDBTitle: crystal structure of icar from staphylococcus aureus, a member of the2 tetracycline repressor protein family
63c3bcgA_



not modelled 99.8 15 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator acrr;
PDBTitle: conformational changes of the acrr regulator reveal a2 mechanism of induction
64c2d6yA_



not modelled 99.8 14 PDB header:gene regulation
Chain: A: PDB Molecule:putative tetr family regulatory protein;
PDBTitle: crystal structure of transcriptional factor sco4008 from streptomyces2 coelicolor a3(2)
65c2hkuB_



not modelled 99.8 20 PDB header:transcription regulator
Chain: B: PDB Molecule:a putative transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator from rhodococcus sp. rha1
66c3dpjB_



not modelled 99.8 14 PDB header:dna binding protein
Chain: B: PDB Molecule:transcription regulator, tetr family;
PDBTitle: the crystal structure of a tetr transcription regulator2 from silicibacter pomeroyi dss
67c3cdlA_



not modelled 99.8 15 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator aefr;
PDBTitle: crystal structure of a tetr family transcriptional regulator from2 pseudomonas syringae pv. tomato str. dc3000
68c3jsjC_



not modelled 99.8 15 PDB header:transcription
Chain: C: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of a putative tetr-transcriptional regulator2 (sav143) from streptomyces avermitilis ma-4680 at 2.10 a resolution
69c3f1bA_



not modelled 99.8 19 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr-like transcriptional regulator;
PDBTitle: the crystal structure of a tetr-like transcriptional regulator from2 rhodococcus sp. rha1.
70c2ibdB_



not modelled 99.8 15 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:possible transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulatory protein2 rha5900
71c2oi8A_



not modelled 99.7 13 PDB header:transcription
Chain: A: PDB Molecule:putative regulatory protein sco4313;
PDBTitle: crystal structure of putative regulatory protein sco4313
72c2rekA_



not modelled 99.7 19 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr-family transcriptional regulator
73c3g56A_



not modelled 99.7 11 PDB header:dna binding protein
Chain: A: PDB Molecule:regulator of macrolide 2'-phosphotransferase i;
PDBTitle: structure of the macrolide biosensor protein, mphr(a)
74c1z0xA_



not modelled 99.7 15 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator, tetr family from2 enterococcus faecalis v583
75c3cjdB_



not modelled 99.7 17 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of putative tetr transcriptional regulator2 (yp_510936.1) from jannaschia sp. ccs1 at 1.79 a resolution
76c2q24A_



not modelled 99.7 19 PDB header:transcription
Chain: A: PDB Molecule:putative tetr family transcriptional regulator;
PDBTitle: crystal structure of tetr transcriptional regulator sco0520 from2 streptomyces coelicolor
77c1zk8A_



not modelled 99.7 10 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator from bacillus cereus2 atcc 14579
78c2qwtA_



not modelled 99.7 16 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of the tetr transcription regulatory2 protein from mycobacterium vanbaalenii
79c2zcmB_



not modelled 99.7 11 PDB header:transcription
Chain: B: PDB Molecule:biofilm operon icaabcd hth-type negative transcriptional
PDBTitle: crystal structure of icar, a repressor of the tetr family
80c3c2bA_



not modelled 99.7 14 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of tetr transcriptional regulator from agrobacterium2 tumefaciens
81c3he0A_



not modelled 99.7 17 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the structure of a putative transcriptional regulator tetr family2 protein from vibrio parahaemolyticus.
82c2of7A_



not modelled 99.7 20 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a tetr-family2 transcriptional regulator from streptomyces coelicolor a3
83c2dg7A_



not modelled 99.7 15 PDB header:gene regulation
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of the putative transcriptional regulator sco03372 from streptomyces coelicolor a3(2)
84c3qkxB_



not modelled 99.7 12 PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator hi_0893;
PDBTitle: crystal structure of a tetr-family transcriptional regulator (hi0893)2 from haemophilus influenzae rd at 2.35 a resolution
85c3kkdA_



not modelled 99.7 13 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: structure of a putative tetr transcriptional regulator (pa3699) from2 pseudomonas aeruginosa pa01
86c3bniA_



not modelled 99.7 18 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr-family transcriptional regulator from2 streptomyces coelicolor
87c3knwB_



not modelled 99.7 13 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator (tetr/acrr family);
PDBTitle: crystal structure of a putative transcriptional regulator (tetr/acrr2 family member) from putative transcriptional regulator (tetr/acrr3 family)
88c2fd5A_



not modelled 99.7 16 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: the crystal structure of a transcriptional regulator from pseudomonas2 aeruginosa pao1
89c2dg8D_



not modelled 99.7 19 PDB header:gene regulation
Chain: D: PDB Molecule:putative tetr-family transcriptional regulatory protein;
PDBTitle: crystal structure of the putative trasncriptional regulator sco75182 from streptomyces coelicolor a3(2)
90d1t33a1



not modelled 99.7 85 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
91c2y31A_



not modelled 99.7 14 PDB header:transcription
Chain: A: PDB Molecule:putative repressor simreg2;
PDBTitle: simocyclinone c4 bound form of tetr-like repressor simr
92c3b81A_



not modelled 99.7 17 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, acrr family;
PDBTitle: crystal structure of predicted dna-binding transcriptional regulator2 of tetr/acrr family (np_350189.1) from clostridium acetobutylicum at3 2.10 a resolution
93c3iuvA_



not modelled 99.7 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized tetr family protein;
PDBTitle: the structure of a member of tetr family (sco1917) from2 streptomyces coelicolor a3
94c1sgmA_



not modelled 99.7 13 PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator yxaf;
PDBTitle: crystal structure of hypothetical protein yxaf
95c2guhA_



not modelled 99.7 19 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of the putative tetr-family transcriptional2 regulator from rhodococcus sp. rha1
96c2eh3A_



not modelled 99.7 15 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of aq_1058, a transcriptional regulator (terr/acrr2 family) from aquifex aeolicus vf5
97c1bjzA_



not modelled 99.7 14 PDB header:transcription regulation
Chain: A: PDB Molecule:tetracycline repressor;
PDBTitle: tetracycline chelated mg2+-ion initiates helix unwinding for tet2 repressor induction
98c3colB_



not modelled 99.7 11 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcription regulator;
PDBTitle: crystal structure of putative transcription regulator from2 lactobacillus plantarum
99c3fiwB_



not modelled 99.7 21 PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structure of sco0253, a tetr-family transcriptional regulator from2 streptomyces coelicolor
100c3aqsD_



not modelled 99.7 17 PDB header:transcription regulator
Chain: D: PDB Molecule:bacterial regulatory proteins, tetr family;
PDBTitle: crystal structure of rolr (ncgl1110) without ligand
101c2jk3A_



not modelled 99.7 19 PDB header:transcription
Chain: A: PDB Molecule:hemolysin ii regulatory protein;
PDBTitle: crystal structure of the hlyiir mutant protein with2 residues 169-186 substituted by gssgssg linker
102c2hxoB_



not modelled 99.7 13 PDB header:transcription
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structure of the transcriptional regulator sco7222, a tetr from2 streptomyces coelicolor
103c3b6aC_



not modelled 99.7 11 PDB header:transcription
Chain: C: PDB Molecule:actr protein;
PDBTitle: crystal structure of the streptomyces coelicolor tetr2 family protein actr in complex with actinorhodin
104c2pz9A_



not modelled 99.7 20 PDB header:transcription
Chain: A: PDB Molecule:putative regulatory protein;
PDBTitle: crystal structure of putative transcriptional regulator sco4942 from2 streptomyces coelicolor
105c2iu5A_



not modelled 99.7 12 PDB header:transcription
Chain: A: PDB Molecule:hth-type dhaklm operon transcriptional activator dhas;
PDBTitle: dihydroxyacetone kinase operon activator dhas
106c3bqyA_



not modelled 99.7 16 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr family transcriptional regulator;
PDBTitle: crystal structure of a possible tetr family transcriptional regulator2 from streptomyces coelicolor a3(2).
107c3o60A_



not modelled 99.7 8 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0861 protein;
PDBTitle: the crystal structure of lin0861 from listeria innocua to 2.8a
108c2vprA_



not modelled 99.7 16 PDB header:transcription
Chain: A: PDB Molecule:tetracycline resistance repressor protein;
PDBTitle: tet repressor class h in complex with 5a,6-2 anhydrotetracycline-mg
109c2i10A_



not modelled 99.7 14 PDB header:transcription
Chain: A: PDB Molecule:putative tetr transcriptional regulator;
PDBTitle: putative tetr transcriptional regulator from rhodococcus sp. rha1
110c3ni7A_



not modelled 99.6 14 PDB header:transcription regulator
Chain: A: PDB Molecule:bacterial regulatory proteins, tetr family;
PDBTitle: crystal structure of the tetr transcriptional regulator from2 nitrosomonas europaea atcc 19718
111c3kkcB_



not modelled 99.6 11 PDB header:transcription regulator
Chain: B: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: the crystal structure of tetr transcriptional regulator from2 streptococcus agalactiae 2603v
112c2yvhA_



not modelled 99.6 15 PDB header:transcription/dna
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of the operator-binding form of the multi-drug2 binding transcriptional repressor cgmr
113c2g7lA_



not modelled 99.6 13 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative transcription regulator sco7704 from2 streptomyces coelicor
114c2qkoA_



not modelled 99.6 16 PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, tetr family protein;
PDBTitle: crystal structure of transcriptional regulator rha06399 from2 rhodococcus sp. rha1
115c3egqB_



not modelled 99.6 18 PDB header:transcription
Chain: B: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: crystal structure of a tetr-family transcriptional regulator (af_1817)2 from archaeoglobus fulgidus at 2.55 a resolution
116c2hxiA_



not modelled 99.6 13 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator from streptomyces coelicolor a3(2)
117d2oi8a1



not modelled 99.6 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
118c3crjC_



not modelled 99.6 16 PDB header:transcription regulator
Chain: C: PDB Molecule:transcription regulator;
PDBTitle: crystal structure of a tetr transcription regulator from haloarcula2 marismortui atcc 43049
119c2g7gA_



not modelled 99.6 11 PDB header:transcription
Chain: A: PDB Molecule:rha04620, putative transcriptional regulator;
PDBTitle: the crystal structure of the putative transcriptional regulator2 rha04620 from rhodococcus sp. rha1
120d2o7ta1



not modelled 99.6 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0