Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP39334
DateThu Jan 5 11:59:26 GMT 2012
Unique Job ID19dae9741d83f86f

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2pbxB_
Top template information
PDB header:transcription
Chain: B: PDB Molecule:hemagglutinin/protease regulatory protein;
PDBTitle: vibrio cholerae hapr
Confidence and coverage
Confidence: 99.9% Coverage: 94%
186 residues ( 94% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MVTKKQSRVPGRPRRFAPEQAISAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSK
Secondary structure 
SS confidence 
Disorder  ???????????????
?
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  AGLFSRVLNEYVGTEAIPLADILRDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIH
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  SHDPQARDIAVQYYHAAETTIYDYIARRHPQRAQCVTDFMSTVMSGLSAKAREGHSIEQL
Secondary structure 
SS confidence 
Disorder  ??
?
??
??
Disorder confidence 
 
   .........190.......
Sequence  CATAAMAGEAIKTILEE
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2pbx chain B

3D model

Region: 6 - 191
Aligned: 186
Modelled: 186
Confidence: 99.9%
Identity: 13%
PDB header:transcription
Chain: B: PDB Molecule:hemagglutinin/protease regulatory protein;
PDBTitle: vibrio cholerae hapr

Phyre2

PDB 3g7r chain B

3D model

Region: 9 - 196
Aligned: 188
Modelled: 188
Confidence: 99.9%
Identity: 12%
PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of sco4454, a tetr-family transcriptional2 regulator from streptomyces coelicolor

Phyre2

PDB 2g7s chain A

3D model

Region: 13 - 193
Aligned: 181
Modelled: 181
Confidence: 99.9%
Identity: 15%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of transcriptional regulator, tetr family, from2 agrobacterium tumefaciens

Phyre2

PDB 3e7q chain B

3D model

Region: 2 - 193
Aligned: 191
Modelled: 192
Confidence: 99.9%
Identity: 10%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: the crystal structure of the putative transcriptional regulator from2 pseudomonas aeruginosa pao1

Phyre2

PDB 3qbm chain A

3D model

Region: 12 - 196
Aligned: 185
Modelled: 185
Confidence: 99.9%
Identity: 15%
PDB header:transcription regulator
Chain: A: PDB Molecule:tetr transcriptional regulator;
PDBTitle: crystal structure of a tetr transcriptional regulator (caur_2221) from2 chloroflexus aurantiacus j-10-fl at 1.80 a resolution

Phyre2

PDB 3dpj chain B

3D model

Region: 14 - 197
Aligned: 184
Modelled: 183
Confidence: 99.9%
Identity: 16%
PDB header:dna binding protein
Chain: B: PDB Molecule:transcription regulator, tetr family;
PDBTitle: the crystal structure of a tetr transcription regulator2 from silicibacter pomeroyi dss

Phyre2

PDB 2i10 chain A

3D model

Region: 17 - 191
Aligned: 171
Modelled: 175
Confidence: 99.9%
Identity: 25%
PDB header:transcription
Chain: A: PDB Molecule:putative tetr transcriptional regulator;
PDBTitle: putative tetr transcriptional regulator from rhodococcus sp. rha1

Phyre2

PDB 3jsj chain C

3D model

Region: 15 - 190
Aligned: 175
Modelled: 176
Confidence: 99.9%
Identity: 19%
PDB header:transcription
Chain: C: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of a putative tetr-transcriptional regulator2 (sav143) from streptomyces avermitilis ma-4680 at 2.10 a resolution

Phyre2

PDB 3eup chain A

3D model

Region: 13 - 194
Aligned: 182
Modelled: 182
Confidence: 99.9%
Identity: 13%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of the transcriptional regulator, tetr family2 from cytophaga hutchinsonii

Phyre2

PDB 2f07 chain A

3D model

Region: 7 - 196
Aligned: 190
Modelled: 190
Confidence: 99.9%
Identity: 15%
PDB header:transcription
Chain: A: PDB Molecule:yvdt;
PDBTitle: crystal structure of yvdt from bacillus subtilis

Phyre2

PDB 3on2 chain C

3D model

Region: 9 - 197
Aligned: 189
Modelled: 189
Confidence: 99.9%
Identity: 9%
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: structure of a protein with unknown function from rhodococcus sp. rha1

Phyre2

PDB 2hyj chain A

3D model

Region: 13 - 191
Aligned: 179
Modelled: 179
Confidence: 99.9%
Identity: 11%
PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: the crystal structure of a tetr-family transcriptional regulator from2 streptomyces coelicolor

Phyre2

PDB 2gen chain A

3D model

Region: 17 - 196
Aligned: 180
Modelled: 179
Confidence: 99.9%
Identity: 16%
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a probable2 transcriptional regulator from pseudomonas aeruginosa pao1

Phyre2

PDB 3mvp chain A

3D model

Region: 4 - 196
Aligned: 193
Modelled: 193
Confidence: 99.9%
Identity: 15%
PDB header:transcription regulator
Chain: A: PDB Molecule:tetr/acrr transcriptional regulator;
PDBTitle: the crystal structure of a tetr/acrr transcriptional regulator from2 streptococcus mutans to 1.85a

Phyre2

PDB 3bru chain A

3D model

Region: 14 - 189
Aligned: 176
Modelled: 176
Confidence: 99.9%
Identity: 15%
PDB header:transcription
Chain: A: PDB Molecule:regulatory protein, tetr family;
PDBTitle: crystal structure of regulatory protein tetr from rhodobacter2 sphaeroides

Phyre2

PDB 2np5 chain A

3D model

Region: 17 - 196
Aligned: 179
Modelled: 176
Confidence: 99.9%
Identity: 16%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator (rha1_ro04179) from2 rhodococcus sp. rha1.

Phyre2

PDB 3f1b chain A

3D model

Region: 12 - 195
Aligned: 179
Modelled: 184
Confidence: 99.9%
Identity: 16%
PDB header:transcription regulator
Chain: A: PDB Molecule:tetr-like transcriptional regulator;
PDBTitle: the crystal structure of a tetr-like transcriptional regulator from2 rhodococcus sp. rha1.

Phyre2

PDB 1sgm chain A

3D model

Region: 17 - 192
Aligned: 176
Modelled: 176
Confidence: 99.9%
Identity: 13%
PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator yxaf;
PDBTitle: crystal structure of hypothetical protein yxaf

Phyre2

PDB 3lwj chain A

3D model

Region: 13 - 195
Aligned: 181
Modelled: 183
Confidence: 99.9%
Identity: 10%
PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 (yp_752756.1) from syntrophomonas wolfei str. goettingen at 2.07 a3 resolution

Phyre2

PDB 2nx4 chain A

3D model

Region: 7 - 194
Aligned: 187
Modelled: 188
Confidence: 99.9%
Identity: 12%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:transcriptional regulator, tetr family protein;
PDBTitle: the crystal structure of athe putative tetr-family transcriptional2 regulator rha06780 from rhodococcus sp. rha1.

Phyre2
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c2pbxB_
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c3g7rB_
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c2g7sA_
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c3e7qB_
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c3qbmA_
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c3dpjB_
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c2i10A_
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c3jsjC_
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c3eupA_
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c2f07A_
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c3on2C_
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c2hyjA_
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c2genA_
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c3mvpA_
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c3bruA_
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c2np5A_
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c3f1bA_
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c1sgmA_
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c3lwjA_
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c2nx4A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2pbxB_
99.9 13 PDB header:transcription
Chain: B: PDB Molecule:hemagglutinin/protease regulatory protein;
PDBTitle: vibrio cholerae hapr
2c3g7rB_
99.9 12 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of sco4454, a tetr-family transcriptional2 regulator from streptomyces coelicolor
3c2g7sA_
99.9 15 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of transcriptional regulator, tetr family, from2 agrobacterium tumefaciens
4c3e7qB_
99.9 10 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: the crystal structure of the putative transcriptional regulator from2 pseudomonas aeruginosa pao1
5c3qbmA_
99.9 15 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr transcriptional regulator;
PDBTitle: crystal structure of a tetr transcriptional regulator (caur_2221) from2 chloroflexus aurantiacus j-10-fl at 1.80 a resolution
6c3dpjB_
99.9 16 PDB header:dna binding protein
Chain: B: PDB Molecule:transcription regulator, tetr family;
PDBTitle: the crystal structure of a tetr transcription regulator2 from silicibacter pomeroyi dss
7c2i10A_
99.9 25 PDB header:transcription
Chain: A: PDB Molecule:putative tetr transcriptional regulator;
PDBTitle: putative tetr transcriptional regulator from rhodococcus sp. rha1
8c3jsjC_
99.9 19 PDB header:transcription
Chain: C: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of a putative tetr-transcriptional regulator2 (sav143) from streptomyces avermitilis ma-4680 at 2.10 a resolution
9c3eupA_
99.9 13 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of the transcriptional regulator, tetr family2 from cytophaga hutchinsonii
10c2f07A_
99.9 15 PDB header:transcription
Chain: A: PDB Molecule:yvdt;
PDBTitle: crystal structure of yvdt from bacillus subtilis
11c3on2C_
99.9 9 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: structure of a protein with unknown function from rhodococcus sp. rha1
12c2hyjA_
99.9 11 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: the crystal structure of a tetr-family transcriptional regulator from2 streptomyces coelicolor
13c2genA_
99.9 16 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a probable2 transcriptional regulator from pseudomonas aeruginosa pao1
14c3mvpA_
99.9 15 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr/acrr transcriptional regulator;
PDBTitle: the crystal structure of a tetr/acrr transcriptional regulator from2 streptococcus mutans to 1.85a
15c3bruA_
99.9 15 PDB header:transcription
Chain: A: PDB Molecule:regulatory protein, tetr family;
PDBTitle: crystal structure of regulatory protein tetr from rhodobacter2 sphaeroides
16c2np5A_
99.9 16 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator (rha1_ro04179) from2 rhodococcus sp. rha1.
17c3f1bA_
99.9 16 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr-like transcriptional regulator;
PDBTitle: the crystal structure of a tetr-like transcriptional regulator from2 rhodococcus sp. rha1.
18c1sgmA_
99.9 13 PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator yxaf;
PDBTitle: crystal structure of hypothetical protein yxaf
19c3lwjA_
99.9 10 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 (yp_752756.1) from syntrophomonas wolfei str. goettingen at 2.07 a3 resolution
20c2nx4A_
99.9 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:transcriptional regulator, tetr family protein;
PDBTitle: the crystal structure of athe putative tetr-family transcriptional2 regulator rha06780 from rhodococcus sp. rha1.
21c2gfnA_
not modelled 99.9 13 PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator pksa related protein;
PDBTitle: crystal structure of hth-type transcriptional regulator pksa related2 protein from rhodococcus sp. rha1
22c3pasA_
not modelled 99.9 14 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr family transcription regulator;
PDBTitle: crystal structure of a tetr family transcription regulator (maqu_1417)2 from marinobacter aquaeolei vt8 at 1.90 a resolution
23c3mnlA_
not modelled 99.9 14 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulatory protein (probably tetr-family);
PDBTitle: the crystal structure of kstr (rv3574) from mycobacterium tuberculosis2 h37rv
24c1rktA_
not modelled 99.9 16 PDB header:transcription
Chain: A: PDB Molecule:protein yfir;
PDBTitle: crystal structure of yfir, a putative transcriptional regulator from2 bacillus subtilis
25c3knwB_
not modelled 99.9 15 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator (tetr/acrr family);
PDBTitle: crystal structure of a putative transcriptional regulator (tetr/acrr2 family member) from putative transcriptional regulator (tetr/acrr3 family)
26c3himA_
not modelled 99.9 16 PDB header:transcription regulator
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of a bacterial regulatory protein in the tetr2 family from rhodococcus rha1 to 2.2a
27c3on4D_
not modelled 99.9 16 PDB header:transcription
Chain: D: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of tetr transcriptional regulator from legionella2 pneumophila
28c1jumB_
not modelled 99.9 11 PDB header:transcription
Chain: B: PDB Molecule:hypothetical transcriptional regulator in qaca
PDBTitle: crystal structure of the multidrug binding transcriptional2 repressor qacr bound to the natural drug berberine
29c2g3bB_
not modelled 99.9 17 PDB header:transcription
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 from rhodococcus sp.
30c2iaiA_
not modelled 99.9 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative transcriptional regulator sco3833;
PDBTitle: crystal structure of sco3833, a member of the tetr transcriptional2 regulator family from streptomyces coelicolor a3
31c1vi0B_
not modelled 99.9 12 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator
32c3f0cA_
not modelled 99.9 15 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator from cytophaga2 hutchinsonii atcc 33406
33c2qibA_
not modelled 99.9 19 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr-family transcriptional regulator from2 streptomyces coelicolor
34c3g56A_
not modelled 99.9 17 PDB header:dna binding protein
Chain: A: PDB Molecule:regulator of macrolide 2'-phosphotransferase i;
PDBTitle: structure of the macrolide biosensor protein, mphr(a)
35c3bhqB_
not modelled 99.9 14 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a putative tetr-family transcriptional regulator2 (mlr_4833) from mesorhizobium loti maff303099 at 1.54 a resolution
36c2hytA_
not modelled 99.9 14 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of a tetr-family transcriptional regulator (eca1819)2 from pectobacterium atrosepticum at 1.64 a resolution
37c3anpD_
not modelled 99.9 12 PDB header:transcription
Chain: D: PDB Molecule:transcriptional repressor, tetr family;
PDBTitle: crystal structure of thermus thermophilus fadr, a tetr familly2 transcriptional repressor, in complex with lauroyl-coa.
38c3ppbB_
not modelled 99.9 12 PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr family transcription regulator;
PDBTitle: crystal structure of a putative tetr family transcription regulator2 (shew_3104) from shewanella sp. pv-4 at 2.10 a resolution
39c2hkuB_
not modelled 99.9 17 PDB header:transcription regulator
Chain: B: PDB Molecule:a putative transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator from rhodococcus sp. rha1
40c2zb9A_
not modelled 99.9 15 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of tetr family transcription regulator2 sco0332
41c2raeA_
not modelled 99.9 20 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, acrr family protein;
PDBTitle: crystal structure of a tetr/acrr family transcriptional regulator from2 rhodococcus sp. rha1
42c2rasB_
not modelled 99.9 12 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a putative tetr/acrr family transcriptional2 regulator (saro_0558) from novosphingobium aromaticivorans dsm at3 1.80 a resolution
43c2qtqB_
not modelled 99.9 15 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a predicted dna-binding transcriptional regulator2 (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 a3 resolution
44c3ccyA_
not modelled 99.9 14 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of a tetr-family transcriptional regulator from2 bordetella parapertussis 12822
45c2dg7A_
not modelled 99.9 13 PDB header:gene regulation
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of the putative transcriptional regulator sco03372 from streptomyces coelicolor a3(2)
46c1zkgB_
not modelled 99.9 15 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator, tetr family (tm1030)2 from thermotoga maritima at 2.30 a resolution
47c3npiB_
not modelled 99.9 16 PDB header:gene regulation
Chain: B: PDB Molecule:tetr family regulatory protein;
PDBTitle: crystal structure of a tetr family regulatory protein (dip1788) from2 corynebacterium diphtheriae at 2.96 a resolution
48c3he0A_
not modelled 99.9 17 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the structure of a putative transcriptional regulator tetr family2 protein from vibrio parahaemolyticus.
49c2dg8D_
not modelled 99.9 11 PDB header:gene regulation
Chain: D: PDB Molecule:putative tetr-family transcriptional regulatory protein;
PDBTitle: crystal structure of the putative trasncriptional regulator sco75182 from streptomyces coelicolor a3(2)
50c3geuC_
not modelled 99.9 13 PDB header:cell adhesion
Chain: C: PDB Molecule:intercellular adhesion protein r;
PDBTitle: crystal structure of icar from staphylococcus aureus, a member of the2 tetracycline repressor protein family
51c2uxoB_
not modelled 99.9 15 PDB header:transcription
Chain: B: PDB Molecule:hth-type transcriptional regulator ttgr;
PDBTitle: ttgr in complex with tetracycline
52c3nrgA_
not modelled 99.9 15 PDB header:transcription
Chain: A: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: crystal structure of a tetr family transcriptional regulator2 (caur_2714) from chloroflexus aurantiacus j-10-fl at 2.56 a3 resolution
53c1ui6B_
not modelled 99.9 15 PDB header:antibiotic
Chain: B: PDB Molecule:a-factor receptor homolog;
PDBTitle: crystal structure of gamma-butyrolactone receptor (arpa-like protein)
54c3dcfB_
not modelled 99.9 17 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator of the tetr/acrr
PDBTitle: crystal structure of transcriptional regulator of the2 tetr/acrr family (yp_290855.1) from thermobifida fusca yx-3 er1 at 2.50 a resolution
55c1u9nA_
not modelled 99.9 12 PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional repressor ethr;
PDBTitle: crystal structure of the transcriptional regulator ethr in2 a ligand bound conformation opens therapeutic perspectives3 against tuberculosis and leprosy
56c3cjdB_
not modelled 99.9 10 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of putative tetr transcriptional regulator2 (yp_510936.1) from jannaschia sp. ccs1 at 1.79 a resolution
57c3c07B_
not modelled 99.9 13 PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of a tetr family transcriptional regulator from2 streptomyces coelicolor a3(2)
58c2q24A_
not modelled 99.9 16 PDB header:transcription
Chain: A: PDB Molecule:putative tetr family transcriptional regulator;
PDBTitle: crystal structure of tetr transcriptional regulator sco0520 from2 streptomyces coelicolor
59c2oi8A_
not modelled 99.9 12 PDB header:transcription
Chain: A: PDB Molecule:putative regulatory protein sco4313;
PDBTitle: crystal structure of putative regulatory protein sco4313
60c2ibdB_
not modelled 99.9 12 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:possible transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulatory protein2 rha5900
61c3lsjA_
not modelled 99.9 15 PDB header:transcription
Chain: A: PDB Molecule:dest;
PDBTitle: crystal structure of dest in complex with palmitoyl-coa
62c3qkxB_
not modelled 99.9 13 PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator hi_0893;
PDBTitle: crystal structure of a tetr-family transcriptional regulator (hi0893)2 from haemophilus influenzae rd at 2.35 a resolution
63c1pb6D_
not modelled 99.9 16 PDB header:transcription
Chain: D: PDB Molecule:hypothetical transcriptional regulator ycdc;
PDBTitle: crystal structure of hypothetical transcriptional regulator ycdc
64c2id3A_
not modelled 99.9 16 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator sco5951 from2 streptomyces coelicolor a3(2)
65c3rh2A_
not modelled 99.9 14 PDB header:dna binding protein
Chain: A: PDB Molecule:hypothetical tetr-like transcriptional regulator;
PDBTitle: crystal structure of a hypothetical tetr-like transcriptional2 regulator (sama_0099) from shewanella amazonensis sb2b at 2.42 a3 resolution
66c3cwrA_
not modelled 99.9 17 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator of tetr2 family (yp_425770.1) from rhodospirillum rubrum atcc 111703 at 1.50 a resolution
67c3aqsD_
not modelled 99.9 16 PDB header:transcription regulator
Chain: D: PDB Molecule:bacterial regulatory proteins, tetr family;
PDBTitle: crystal structure of rolr (ncgl1110) without ligand
68c2fd5A_
not modelled 99.9 17 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: the crystal structure of a transcriptional regulator from pseudomonas2 aeruginosa pao1
69c2fbqA_
not modelled 99.9 17 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of transcriptional regulator pa3006
70c2wuiA_
not modelled 99.9 9 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of mexz, a key repressor responsible for2 antibiotic resistance in pseudomonas aeruginosa.
71c1zk8A_
not modelled 99.9 15 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator from bacillus cereus2 atcc 14579
72c3bjbE_
not modelled 99.9 18 PDB header:transcription regulator
Chain: E: PDB Molecule:probable transcriptional regulator, tetr family protein;
PDBTitle: crystal structure of a tetr transcriptional regulator from rhodococcus2 sp. rha1
73c3bcgA_
not modelled 99.9 14 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator acrr;
PDBTitle: conformational changes of the acrr regulator reveal a2 mechanism of induction
74c2eh3A_
not modelled 99.9 15 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of aq_1058, a transcriptional regulator (terr/acrr2 family) from aquifex aeolicus vf5
75c3b81A_
not modelled 99.9 14 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, acrr family;
PDBTitle: crystal structure of predicted dna-binding transcriptional regulator2 of tetr/acrr family (np_350189.1) from clostridium acetobutylicum at3 2.10 a resolution
76c2of7A_
not modelled 99.9 16 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a tetr-family2 transcriptional regulator from streptomyces coelicolor a3
77c2qcoA_
not modelled 99.9 14 PDB header:transcription
Chain: A: PDB Molecule:cmer;
PDBTitle: crystal structure of the transcriptional regulator cmer from2 campylobacter jejuni
78c3iuvA_
not modelled 99.8 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized tetr family protein;
PDBTitle: the structure of a member of tetr family (sco1917) from2 streptomyces coelicolor a3
79c3colB_
not modelled 99.8 12 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcription regulator;
PDBTitle: crystal structure of putative transcription regulator from2 lactobacillus plantarum
80c2fq4A_
not modelled 99.8 13 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of the transcriptional regulator (tetr family)2 from bacillus cereus
81c3s5rA_
not modelled 99.8 13 PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional regulator tetr family;
PDBTitle: crystal structure of a putative transcriptional regulator of the tetr2 family (syn_02108) from syntrophus aciditrophicus at 2.60 a3 resolution
82c2zcxA_
not modelled 99.8 12 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr family transcriptional regulator2 sco7815
83c1t33B_
not modelled 99.8 16 PDB header:transcription
Chain: B: PDB Molecule:putative transcriptional repressor (tetr/acrr family);
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional repressor (tetr/acrr family) from salmonella3 typhimurim lt2
84c2d6yA_
not modelled 99.8 13 PDB header:gene regulation
Chain: A: PDB Molecule:putative tetr family regulatory protein;
PDBTitle: crystal structure of transcriptional factor sco4008 from streptomyces2 coelicolor a3(2)
85c3gziA_
not modelled 99.8 19 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution
86c3dewA_
not modelled 99.8 21 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the structure of a putative tetr family transcriptional regulator from2 geobacter sulfurreducens pca.
87c3c2bA_
not modelled 99.8 14 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of tetr transcriptional regulator from agrobacterium2 tumefaciens
88c2zcmB_
not modelled 99.8 13 PDB header:transcription
Chain: B: PDB Molecule:biofilm operon icaabcd hth-type negative transcriptional
PDBTitle: crystal structure of icar, a repressor of the tetr family
89c2rekA_
not modelled 99.8 17 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr-family transcriptional regulator
90c3kkdA_
not modelled 99.8 10 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: structure of a putative tetr transcriptional regulator (pa3699) from2 pseudomonas aeruginosa pa01
91c2yvhA_
not modelled 99.8 15 PDB header:transcription/dna
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of the operator-binding form of the multi-drug2 binding transcriptional repressor cgmr
92c2o7tA_
not modelled 99.8 11 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a tetr family transcriptional regulator2 (ncgl1578, cgl1640) from corynebacterium glutamicum at 2.10 a3 resolution
93c3cdlA_
not modelled 99.8 17 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator aefr;
PDBTitle: crystal structure of a tetr family transcriptional regulator from2 pseudomonas syringae pv. tomato str. dc3000
94c3ni7A_
not modelled 99.8 8 PDB header:transcription regulator
Chain: A: PDB Molecule:bacterial regulatory proteins, tetr family;
PDBTitle: crystal structure of the tetr transcriptional regulator from2 nitrosomonas europaea atcc 19718
95c3nnrA_
not modelled 99.8 12 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a tetr-family transcriptional regulator2 (maqu_3571) from marinobacter aquaeolei vt8 at 2.49 a resolution
96c2qkoA_
not modelled 99.8 11 PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, tetr family protein;
PDBTitle: crystal structure of transcriptional regulator rha06399 from2 rhodococcus sp. rha1
97c3nxcA_
not modelled 99.8 13 PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type protein slma;
PDBTitle: molecular mechanism by which the escherichia coli nucleoid occlusion2 factor, slma, keeps cytokinesis in check
98c2guhA_
not modelled 99.8 15 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of the putative tetr-family transcriptional2 regulator from rhodococcus sp. rha1
99c3egqB_
not modelled 99.8 13 PDB header:transcription
Chain: B: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: crystal structure of a tetr-family transcriptional regulator (af_1817)2 from archaeoglobus fulgidus at 2.55 a resolution
100c3crjC_
not modelled 99.8 14 PDB header:transcription regulator
Chain: C: PDB Molecule:transcription regulator;
PDBTitle: crystal structure of a tetr transcription regulator from haloarcula2 marismortui atcc 43049
101c3kkcB_
not modelled 99.8 11 PDB header:transcription regulator
Chain: B: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: the crystal structure of tetr transcriptional regulator from2 streptococcus agalactiae 2603v
102c2vprA_
not modelled 99.8 12 PDB header:transcription
Chain: A: PDB Molecule:tetracycline resistance repressor protein;
PDBTitle: tet repressor class h in complex with 5a,6-2 anhydrotetracycline-mg
103c3fiwB_
not modelled 99.8 18 PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structure of sco0253, a tetr-family transcriptional regulator from2 streptomyces coelicolor
104c2qwtA_
not modelled 99.8 13 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of the tetr transcription regulatory2 protein from mycobacterium vanbaalenii
105c3bniA_
not modelled 99.8 17 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr-family transcriptional regulator from2 streptomyces coelicolor
106c2y31A_
not modelled 99.8 21 PDB header:transcription
Chain: A: PDB Molecule:putative repressor simreg2;
PDBTitle: simocyclinone c4 bound form of tetr-like repressor simr
107c2jk3A_
not modelled 99.8 14 PDB header:transcription
Chain: A: PDB Molecule:hemolysin ii regulatory protein;
PDBTitle: crystal structure of the hlyiir mutant protein with2 residues 169-186 substituted by gssgssg linker
108c1bjzA_
not modelled 99.8 16 PDB header:transcription regulation
Chain: A: PDB Molecule:tetracycline repressor;
PDBTitle: tetracycline chelated mg2+-ion initiates helix unwinding for tet2 repressor induction
109c2hxoB_
not modelled 99.8 12 PDB header:transcription
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structure of the transcriptional regulator sco7222, a tetr from2 streptomyces coelicolor
110c3b6aC_
not modelled 99.8 15 PDB header:transcription
Chain: C: PDB Molecule:actr protein;
PDBTitle: crystal structure of the streptomyces coelicolor tetr2 family protein actr in complex with actinorhodin
111c3o60A_
not modelled 99.8 6 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0861 protein;
PDBTitle: the crystal structure of lin0861 from listeria innocua to 2.8a
112c2iu5A_
not modelled 99.8 11 PDB header:transcription
Chain: A: PDB Molecule:hth-type dhaklm operon transcriptional activator dhas;
PDBTitle: dihydroxyacetone kinase operon activator dhas
113c2pz9A_
not modelled 99.8 13 PDB header:transcription
Chain: A: PDB Molecule:putative regulatory protein;
PDBTitle: crystal structure of putative transcriptional regulator sco4942 from2 streptomyces coelicolor
114c3bqyA_
not modelled 99.8 14 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr family transcriptional regulator;
PDBTitle: crystal structure of a possible tetr family transcriptional regulator2 from streptomyces coelicolor a3(2).
115c2g7lA_
not modelled 99.8 15 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative transcription regulator sco7704 from2 streptomyces coelicor
116c2hxiA_
not modelled 99.8 23 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator from streptomyces coelicolor a3(2)
117c2wgbB_
not modelled 99.8 10 PDB header:transcription
Chain: B: PDB Molecule:tetr family transcriptional repressor lfrr;
PDBTitle: crystal structure of the tetr-like transcriptional2 regulator lfrr from mycobacterium smegmatis
118c2oerA_
not modelled 99.7 16 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: probable transcriptional regulator from pseudomonas2 aeruginosa
119c1z0xA_
not modelled 99.7 17 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator, tetr family from2 enterococcus faecalis v583
120d2oi8a1
not modelled 99.7 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0