Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0ACU2
DateThu Jan 5 11:19:03 GMT 2012
Unique Job ID11c2e3d582638b48

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1pb6D_
Top template information
PDB header:transcription
Chain: D: PDB Molecule:hypothetical transcriptional regulator ycdc;
PDBTitle: crystal structure of hypothetical transcriptional regulator ycdc
Confidence and coverage
Confidence:100.0% Coverage: 92%
196 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFP
Secondary structure 

























SS confidence 



























































Disorder  ???????????????












































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   .........70.........80.........90.........100.........110.........120
Sequence  SKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEML
Secondary structure 






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Disorder 






















??????






























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   .........130.........140.........150.........160.........170.........180
Sequence  AGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQV
Secondary structure 









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Disorder  ???
























































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   .........190.........200.........210..
Sequence  EAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
Secondary structure 









SS confidence 































Disorder 







?



















???
Disorder confidence 































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1pb6 chain D

3D model

Region: 17 - 212
Aligned: 196
Modelled: 196
Confidence: 100.0%
Identity: 100%
PDB header:transcription
Chain: D: PDB Molecule:hypothetical transcriptional regulator ycdc;
PDBTitle: crystal structure of hypothetical transcriptional regulator ycdc

Phyre2

PDB 2qtq chain B

3D model

Region: 19 - 211
Aligned: 193
Modelled: 193
Confidence: 99.9%
Identity: 19%
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a predicted dna-binding transcriptional regulator2 (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 a3 resolution

Phyre2

PDB 3e7q chain B

3D model

Region: 1 - 212
Aligned: 203
Modelled: 207
Confidence: 99.9%
Identity: 14%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: the crystal structure of the putative transcriptional regulator from2 pseudomonas aeruginosa pao1

Phyre2

PDB 2pbx chain B

3D model

Region: 1 - 205
Aligned: 192
Modelled: 205
Confidence: 99.9%
Identity: 13%
PDB header:transcription
Chain: B: PDB Molecule:hemagglutinin/protease regulatory protein;
PDBTitle: vibrio cholerae hapr

Phyre2

PDB 3nrg chain A

3D model

Region: 7 - 212
Aligned: 206
Modelled: 205
Confidence: 99.9%
Identity: 17%
PDB header:transcription
Chain: A: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: crystal structure of a tetr family transcriptional regulator2 (caur_2714) from chloroflexus aurantiacus j-10-fl at 2.56 a3 resolution

Phyre2

PDB 3gzi chain A

3D model

Region: 11 - 209
Aligned: 197
Modelled: 199
Confidence: 99.9%
Identity: 18%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution

Phyre2

PDB 3dew chain A

3D model

Region: 18 - 211
Aligned: 191
Modelled: 194
Confidence: 99.9%
Identity: 20%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the structure of a putative tetr family transcriptional regulator from2 geobacter sulfurreducens pca.

Phyre2

PDB 3him chain A

3D model

Region: 18 - 211
Aligned: 185
Modelled: 194
Confidence: 99.9%
Identity: 15%
PDB header:transcription regulator
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of a bacterial regulatory protein in the tetr2 family from rhodococcus rha1 to 2.2a

Phyre2

PDB 2ras chain B

3D model

Region: 16 - 212
Aligned: 190
Modelled: 197
Confidence: 99.9%
Identity: 15%
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a putative tetr/acrr family transcriptional2 regulator (saro_0558) from novosphingobium aromaticivorans dsm at3 1.80 a resolution

Phyre2

PDB 3lwj chain A

3D model

Region: 15 - 211
Aligned: 191
Modelled: 192
Confidence: 99.9%
Identity: 16%
PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 (yp_752756.1) from syntrophomonas wolfei str. goettingen at 2.07 a3 resolution

Phyre2

PDB 3ppb chain B

3D model

Region: 18 - 212
Aligned: 186
Modelled: 195
Confidence: 99.9%
Identity: 19%
PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr family transcription regulator;
PDBTitle: crystal structure of a putative tetr family transcription regulator2 (shew_3104) from shewanella sp. pv-4 at 2.10 a resolution

Phyre2

PDB 2iai chain A

3D model

Region: 5 - 210
Aligned: 198
Modelled: 195
Confidence: 99.9%
Identity: 17%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative transcriptional regulator sco3833;
PDBTitle: crystal structure of sco3833, a member of the tetr transcriptional2 regulator family from streptomyces coelicolor a3

Phyre2

PDB 3dcf chain B

3D model

Region: 18 - 210
Aligned: 180
Modelled: 193
Confidence: 99.9%
Identity: 22%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator of the tetr/acrr
PDBTitle: crystal structure of transcriptional regulator of the2 tetr/acrr family (yp_290855.1) from thermobifida fusca yx-3 er1 at 2.50 a resolution

Phyre2

PDB 3rh2 chain A

3D model

Region: 18 - 211
Aligned: 190
Modelled: 194
Confidence: 99.9%
Identity: 17%
PDB header:dna binding protein
Chain: A: PDB Molecule:hypothetical tetr-like transcriptional regulator;
PDBTitle: crystal structure of a hypothetical tetr-like transcriptional2 regulator (sama_0099) from shewanella amazonensis sb2b at 2.42 a3 resolution

Phyre2

PDB 3bhq chain B

3D model

Region: 14 - 209
Aligned: 193
Modelled: 196
Confidence: 99.9%
Identity: 17%
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a putative tetr-family transcriptional regulator2 (mlr_4833) from mesorhizobium loti maff303099 at 1.54 a resolution

Phyre2

PDB 1vi0 chain B

3D model

Region: 19 - 210
Aligned: 184
Modelled: 189
Confidence: 99.9%
Identity: 16%
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator

Phyre2

PDB 3pas chain A

3D model

Region: 13 - 212
Aligned: 189
Modelled: 200
Confidence: 99.9%
Identity: 17%
PDB header:transcription regulator
Chain: A: PDB Molecule:tetr family transcription regulator;
PDBTitle: crystal structure of a tetr family transcription regulator (maqu_1417)2 from marinobacter aquaeolei vt8 at 1.90 a resolution

Phyre2

PDB 3f0c chain A

3D model

Region: 17 - 210
Aligned: 191
Modelled: 194
Confidence: 99.9%
Identity: 17%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator from cytophaga2 hutchinsonii atcc 33406

Phyre2

PDB 2zb9 chain A

3D model

Region: 14 - 212
Aligned: 183
Modelled: 199
Confidence: 99.9%
Identity: 21%
PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of tetr family transcription regulator2 sco0332

Phyre2

PDB 2nx4 chain A

3D model

Region: 11 - 205
Aligned: 190
Modelled: 195
Confidence: 99.9%
Identity: 12%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:transcriptional regulator, tetr family protein;
PDBTitle: the crystal structure of athe putative tetr-family transcriptional2 regulator rha06780 from rhodococcus sp. rha1.

Phyre2
1

c1pb6D_
2

c2qtqB_
3

c3e7qB_
4

c2pbxB_
5

c3nrgA_
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c3gziA_
7

c3dewA_
8

c3himA_
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c2rasB_
10

c3lwjA_
11

c3ppbB_
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c2iaiA_
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c3dcfB_
14

c3rh2A_
15

c3bhqB_
16

c1vi0B_
17

c3pasA_
18

c3f0cA_
19

c2zb9A_
20

c2nx4A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1pb6D_



100.0 100 PDB header:transcription
Chain: D: PDB Molecule:hypothetical transcriptional regulator ycdc;
PDBTitle: crystal structure of hypothetical transcriptional regulator ycdc
2c2qtqB_



99.9 19 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a predicted dna-binding transcriptional regulator2 (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 a3 resolution
3c3e7qB_



99.9 14 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: the crystal structure of the putative transcriptional regulator from2 pseudomonas aeruginosa pao1
4c2pbxB_



99.9 13 PDB header:transcription
Chain: B: PDB Molecule:hemagglutinin/protease regulatory protein;
PDBTitle: vibrio cholerae hapr
5c3nrgA_



99.9 17 PDB header:transcription
Chain: A: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: crystal structure of a tetr family transcriptional regulator2 (caur_2714) from chloroflexus aurantiacus j-10-fl at 2.56 a3 resolution
6c3gziA_



99.9 18 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution
7c3dewA_



99.9 20 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the structure of a putative tetr family transcriptional regulator from2 geobacter sulfurreducens pca.
8c3himA_



99.9 15 PDB header:transcription regulator
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of a bacterial regulatory protein in the tetr2 family from rhodococcus rha1 to 2.2a
9c2rasB_



99.9 15 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a putative tetr/acrr family transcriptional2 regulator (saro_0558) from novosphingobium aromaticivorans dsm at3 1.80 a resolution
10c3lwjA_



99.9 16 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 (yp_752756.1) from syntrophomonas wolfei str. goettingen at 2.07 a3 resolution
11c3ppbB_



99.9 19 PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr family transcription regulator;
PDBTitle: crystal structure of a putative tetr family transcription regulator2 (shew_3104) from shewanella sp. pv-4 at 2.10 a resolution
12c2iaiA_



99.9 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative transcriptional regulator sco3833;
PDBTitle: crystal structure of sco3833, a member of the tetr transcriptional2 regulator family from streptomyces coelicolor a3
13c3dcfB_



99.9 22 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator of the tetr/acrr
PDBTitle: crystal structure of transcriptional regulator of the2 tetr/acrr family (yp_290855.1) from thermobifida fusca yx-3 er1 at 2.50 a resolution
14c3rh2A_



99.9 17 PDB header:dna binding protein
Chain: A: PDB Molecule:hypothetical tetr-like transcriptional regulator;
PDBTitle: crystal structure of a hypothetical tetr-like transcriptional2 regulator (sama_0099) from shewanella amazonensis sb2b at 2.42 a3 resolution
15c3bhqB_



99.9 17 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a putative tetr-family transcriptional regulator2 (mlr_4833) from mesorhizobium loti maff303099 at 1.54 a resolution
16c1vi0B_



99.9 16 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator
17c3pasA_



99.9 17 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr family transcription regulator;
PDBTitle: crystal structure of a tetr family transcription regulator (maqu_1417)2 from marinobacter aquaeolei vt8 at 1.90 a resolution
18c3f0cA_



99.9 17 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator from cytophaga2 hutchinsonii atcc 33406
19c2zb9A_



99.9 21 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of tetr family transcription regulator2 sco0332
20c2nx4A_



99.9 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:transcriptional regulator, tetr family protein;
PDBTitle: the crystal structure of athe putative tetr-family transcriptional2 regulator rha06780 from rhodococcus sp. rha1.
21c3qbmA_



not modelled 99.9 16 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr transcriptional regulator;
PDBTitle: crystal structure of a tetr transcriptional regulator (caur_2221) from2 chloroflexus aurantiacus j-10-fl at 1.80 a resolution
22c3eupA_



not modelled 99.9 16 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of the transcriptional regulator, tetr family2 from cytophaga hutchinsonii
23c2hyjA_



not modelled 99.9 17 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: the crystal structure of a tetr-family transcriptional regulator from2 streptomyces coelicolor
24c2f07A_



not modelled 99.9 15 PDB header:transcription
Chain: A: PDB Molecule:yvdt;
PDBTitle: crystal structure of yvdt from bacillus subtilis
25c3npiB_



not modelled 99.9 17 PDB header:gene regulation
Chain: B: PDB Molecule:tetr family regulatory protein;
PDBTitle: crystal structure of a tetr family regulatory protein (dip1788) from2 corynebacterium diphtheriae at 2.96 a resolution
26c3on2C_



not modelled 99.9 17 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: structure of a protein with unknown function from rhodococcus sp. rha1
27c3ccyA_



not modelled 99.9 17 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of a tetr-family transcriptional regulator from2 bordetella parapertussis 12822
28c1rktA_



not modelled 99.9 16 PDB header:transcription
Chain: A: PDB Molecule:protein yfir;
PDBTitle: crystal structure of yfir, a putative transcriptional regulator from2 bacillus subtilis
29c3lsjA_



not modelled 99.9 17 PDB header:transcription
Chain: A: PDB Molecule:dest;
PDBTitle: crystal structure of dest in complex with palmitoyl-coa
30c2genA_



not modelled 99.9 22 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a probable2 transcriptional regulator from pseudomonas aeruginosa pao1
31c3anpD_



not modelled 99.9 19 PDB header:transcription
Chain: D: PDB Molecule:transcriptional repressor, tetr family;
PDBTitle: crystal structure of thermus thermophilus fadr, a tetr familly2 transcriptional repressor, in complex with lauroyl-coa.
32c2g7sA_



not modelled 99.9 19 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of transcriptional regulator, tetr family, from2 agrobacterium tumefaciens
33c3s5rA_



not modelled 99.9 20 PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional regulator tetr family;
PDBTitle: crystal structure of a putative transcriptional regulator of the tetr2 family (syn_02108) from syntrophus aciditrophicus at 2.60 a3 resolution
34c1jumB_



not modelled 99.9 19 PDB header:transcription
Chain: B: PDB Molecule:hypothetical transcriptional regulator in qaca
PDBTitle: crystal structure of the multidrug binding transcriptional2 repressor qacr bound to the natural drug berberine
35c1t33B_



not modelled 99.9 22 PDB header:transcription
Chain: B: PDB Molecule:putative transcriptional repressor (tetr/acrr family);
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional repressor (tetr/acrr family) from salmonella3 typhimurim lt2
36c2fq4A_



not modelled 99.9 20 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of the transcriptional regulator (tetr family)2 from bacillus cereus
37c2hytA_



not modelled 99.9 19 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of a tetr-family transcriptional regulator (eca1819)2 from pectobacterium atrosepticum at 1.64 a resolution
38c2fbqA_



not modelled 99.9 19 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of transcriptional regulator pa3006
39c1u9nA_



not modelled 99.9 17 PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional repressor ethr;
PDBTitle: crystal structure of the transcriptional regulator ethr in2 a ligand bound conformation opens therapeutic perspectives3 against tuberculosis and leprosy
40c2ibdB_



not modelled 99.9 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:possible transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulatory protein2 rha5900
41c3nnrA_



not modelled 99.9 14 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a tetr-family transcriptional regulator2 (maqu_3571) from marinobacter aquaeolei vt8 at 2.49 a resolution
42c2q24A_



not modelled 99.9 20 PDB header:transcription
Chain: A: PDB Molecule:putative tetr family transcriptional regulator;
PDBTitle: crystal structure of tetr transcriptional regulator sco0520 from2 streptomyces coelicolor
43c3bcgA_



not modelled 99.9 15 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator acrr;
PDBTitle: conformational changes of the acrr regulator reveal a2 mechanism of induction
44c2uxoB_



not modelled 99.9 16 PDB header:transcription
Chain: B: PDB Molecule:hth-type transcriptional regulator ttgr;
PDBTitle: ttgr in complex with tetracycline
45c3f1bA_



not modelled 99.9 20 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr-like transcriptional regulator;
PDBTitle: the crystal structure of a tetr-like transcriptional regulator from2 rhodococcus sp. rha1.
46c1zkgB_



not modelled 99.9 21 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator, tetr family (tm1030)2 from thermotoga maritima at 2.30 a resolution
47c3bruA_



not modelled 99.9 20 PDB header:transcription
Chain: A: PDB Molecule:regulatory protein, tetr family;
PDBTitle: crystal structure of regulatory protein tetr from rhodobacter2 sphaeroides
48c2raeA_



not modelled 99.9 16 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, acrr family protein;
PDBTitle: crystal structure of a tetr/acrr family transcriptional regulator from2 rhodococcus sp. rha1
49c2id3A_



not modelled 99.9 18 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator sco5951 from2 streptomyces coelicolor a3(2)
50c2g3bB_



not modelled 99.9 19 PDB header:transcription
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 from rhodococcus sp.
51c3he0A_



not modelled 99.9 18 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the structure of a putative transcriptional regulator tetr family2 protein from vibrio parahaemolyticus.
52c2rekA_



not modelled 99.9 21 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr-family transcriptional regulator
53c1zk8A_



not modelled 99.9 14 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator from bacillus cereus2 atcc 14579
54c2qwtA_



not modelled 99.9 18 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of the tetr transcription regulatory2 protein from mycobacterium vanbaalenii
55c3mnlA_



not modelled 99.9 16 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulatory protein (probably tetr-family);
PDBTitle: the crystal structure of kstr (rv3574) from mycobacterium tuberculosis2 h37rv
56c3qkxB_



not modelled 99.9 15 PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator hi_0893;
PDBTitle: crystal structure of a tetr-family transcriptional regulator (hi0893)2 from haemophilus influenzae rd at 2.35 a resolution
57c2np5A_



not modelled 99.9 17 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator (rha1_ro04179) from2 rhodococcus sp. rha1.
58c2o7tA_



not modelled 99.9 15 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a tetr family transcriptional regulator2 (ncgl1578, cgl1640) from corynebacterium glutamicum at 2.10 a3 resolution
59c2jk3A_



not modelled 99.9 21 PDB header:transcription
Chain: A: PDB Molecule:hemolysin ii regulatory protein;
PDBTitle: crystal structure of the hlyiir mutant protein with2 residues 169-186 substituted by gssgssg linker
60c2qcoA_



not modelled 99.9 17 PDB header:transcription
Chain: A: PDB Molecule:cmer;
PDBTitle: crystal structure of the transcriptional regulator cmer from2 campylobacter jejuni
61c1ui6B_



not modelled 99.9 16 PDB header:antibiotic
Chain: B: PDB Molecule:a-factor receptor homolog;
PDBTitle: crystal structure of gamma-butyrolactone receptor (arpa-like protein)
62c3c2bA_



not modelled 99.9 14 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of tetr transcriptional regulator from agrobacterium2 tumefaciens
63c2gfnA_



not modelled 99.9 17 PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator pksa related protein;
PDBTitle: crystal structure of hth-type transcriptional regulator pksa related2 protein from rhodococcus sp. rha1
64c2zcxA_



not modelled 99.9 18 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr family transcriptional regulator2 sco7815
65c3c07B_



not modelled 99.9 16 PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of a tetr family transcriptional regulator from2 streptomyces coelicolor a3(2)
66c3g7rB_



not modelled 99.8 17 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of sco4454, a tetr-family transcriptional2 regulator from streptomyces coelicolor
67c3cjdB_



not modelled 99.8 13 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of putative tetr transcriptional regulator2 (yp_510936.1) from jannaschia sp. ccs1 at 1.79 a resolution
68c3bjbE_



not modelled 99.8 14 PDB header:transcription regulator
Chain: E: PDB Molecule:probable transcriptional regulator, tetr family protein;
PDBTitle: crystal structure of a tetr transcriptional regulator from rhodococcus2 sp. rha1
69c3cwrA_



not modelled 99.8 13 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator of tetr2 family (yp_425770.1) from rhodospirillum rubrum atcc 111703 at 1.50 a resolution
70c2wuiA_



not modelled 99.8 17 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of mexz, a key repressor responsible for2 antibiotic resistance in pseudomonas aeruginosa.
71c2oi8A_



not modelled 99.8 16 PDB header:transcription
Chain: A: PDB Molecule:putative regulatory protein sco4313;
PDBTitle: crystal structure of putative regulatory protein sco4313
72c2hkuB_



not modelled 99.8 15 PDB header:transcription regulator
Chain: B: PDB Molecule:a putative transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator from rhodococcus sp. rha1
73c2d6yA_



not modelled 99.8 19 PDB header:gene regulation
Chain: A: PDB Molecule:putative tetr family regulatory protein;
PDBTitle: crystal structure of transcriptional factor sco4008 from streptomyces2 coelicolor a3(2)
74c3cdlA_



not modelled 99.8 23 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator aefr;
PDBTitle: crystal structure of a tetr family transcriptional regulator from2 pseudomonas syringae pv. tomato str. dc3000
75c3colB_



not modelled 99.8 13 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcription regulator;
PDBTitle: crystal structure of putative transcription regulator from2 lactobacillus plantarum
76c2i10A_



not modelled 99.8 15 PDB header:transcription
Chain: A: PDB Molecule:putative tetr transcriptional regulator;
PDBTitle: putative tetr transcriptional regulator from rhodococcus sp. rha1
77c3on4D_



not modelled 99.8 18 PDB header:transcription
Chain: D: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of tetr transcriptional regulator from legionella2 pneumophila
78c3mvpA_



not modelled 99.8 19 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr/acrr transcriptional regulator;
PDBTitle: the crystal structure of a tetr/acrr transcriptional regulator from2 streptococcus mutans to 1.85a
79c2of7A_



not modelled 99.8 18 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a tetr-family2 transcriptional regulator from streptomyces coelicolor a3
80c3b81A_



not modelled 99.8 17 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, acrr family;
PDBTitle: crystal structure of predicted dna-binding transcriptional regulator2 of tetr/acrr family (np_350189.1) from clostridium acetobutylicum at3 2.10 a resolution
81c2qibA_



not modelled 99.8 15 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr-family transcriptional regulator from2 streptomyces coelicolor
82c3geuC_



not modelled 99.8 19 PDB header:cell adhesion
Chain: C: PDB Molecule:intercellular adhesion protein r;
PDBTitle: crystal structure of icar from staphylococcus aureus, a member of the2 tetracycline repressor protein family
83c3dpjB_



not modelled 99.8 20 PDB header:dna binding protein
Chain: B: PDB Molecule:transcription regulator, tetr family;
PDBTitle: the crystal structure of a tetr transcription regulator2 from silicibacter pomeroyi dss
84c3knwB_



not modelled 99.8 20 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator (tetr/acrr family);
PDBTitle: crystal structure of a putative transcriptional regulator (tetr/acrr2 family member) from putative transcriptional regulator (tetr/acrr3 family)
85c1sgmA_



not modelled 99.8 18 PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator yxaf;
PDBTitle: crystal structure of hypothetical protein yxaf
86c3aqsD_



not modelled 99.8 15 PDB header:transcription regulator
Chain: D: PDB Molecule:bacterial regulatory proteins, tetr family;
PDBTitle: crystal structure of rolr (ncgl1110) without ligand
87c2dg7A_



not modelled 99.8 14 PDB header:gene regulation
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of the putative transcriptional regulator sco03372 from streptomyces coelicolor a3(2)
88c1z0xA_



not modelled 99.8 12 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator, tetr family from2 enterococcus faecalis v583
89c2zcmB_



not modelled 99.8 16 PDB header:transcription
Chain: B: PDB Molecule:biofilm operon icaabcd hth-type negative transcriptional
PDBTitle: crystal structure of icar, a repressor of the tetr family
90c2eh3A_



not modelled 99.8 18 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of aq_1058, a transcriptional regulator (terr/acrr2 family) from aquifex aeolicus vf5
91c3fiwB_



not modelled 99.8 16 PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structure of sco0253, a tetr-family transcriptional regulator from2 streptomyces coelicolor
92c3jsjC_



not modelled 99.8 19 PDB header:transcription
Chain: C: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of a putative tetr-transcriptional regulator2 (sav143) from streptomyces avermitilis ma-4680 at 2.10 a resolution
93c3o60A_



not modelled 99.8 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0861 protein;
PDBTitle: the crystal structure of lin0861 from listeria innocua to 2.8a
94c3g56A_



not modelled 99.8 14 PDB header:dna binding protein
Chain: A: PDB Molecule:regulator of macrolide 2'-phosphotransferase i;
PDBTitle: structure of the macrolide biosensor protein, mphr(a)
95c2dg8D_



not modelled 99.8 17 PDB header:gene regulation
Chain: D: PDB Molecule:putative tetr-family transcriptional regulatory protein;
PDBTitle: crystal structure of the putative trasncriptional regulator sco75182 from streptomyces coelicolor a3(2)
96c2y31A_



not modelled 99.8 15 PDB header:transcription
Chain: A: PDB Molecule:putative repressor simreg2;
PDBTitle: simocyclinone c4 bound form of tetr-like repressor simr
97c2pz9A_



not modelled 99.8 24 PDB header:transcription
Chain: A: PDB Molecule:putative regulatory protein;
PDBTitle: crystal structure of putative transcriptional regulator sco4942 from2 streptomyces coelicolor
98c3nxcA_



not modelled 99.8 14 PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type protein slma;
PDBTitle: molecular mechanism by which the escherichia coli nucleoid occlusion2 factor, slma, keeps cytokinesis in check
99c2yvhA_



not modelled 99.8 18 PDB header:transcription/dna
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of the operator-binding form of the multi-drug2 binding transcriptional repressor cgmr
100c2guhA_



not modelled 99.8 16 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of the putative tetr-family transcriptional2 regulator from rhodococcus sp. rha1
101c3iuvA_



not modelled 99.8 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized tetr family protein;
PDBTitle: the structure of a member of tetr family (sco1917) from2 streptomyces coelicolor a3
102c3b6aC_



not modelled 99.8 13 PDB header:transcription
Chain: C: PDB Molecule:actr protein;
PDBTitle: crystal structure of the streptomyces coelicolor tetr2 family protein actr in complex with actinorhodin
103c2fd5A_



not modelled 99.8 14 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: the crystal structure of a transcriptional regulator from pseudomonas2 aeruginosa pao1
104c3bqyA_



not modelled 99.8 18 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr family transcriptional regulator;
PDBTitle: crystal structure of a possible tetr family transcriptional regulator2 from streptomyces coelicolor a3(2).
105c3kkdA_



not modelled 99.8 13 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: structure of a putative tetr transcriptional regulator (pa3699) from2 pseudomonas aeruginosa pa01
106c1bjzA_



not modelled 99.7 14 PDB header:transcription regulation
Chain: A: PDB Molecule:tetracycline repressor;
PDBTitle: tetracycline chelated mg2+-ion initiates helix unwinding for tet2 repressor induction
107c3bniA_



not modelled 99.7 17 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr-family transcriptional regulator from2 streptomyces coelicolor
108c2hxoB_



not modelled 99.7 13 PDB header:transcription
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structure of the transcriptional regulator sco7222, a tetr from2 streptomyces coelicolor
109c3kkcB_



not modelled 99.7 14 PDB header:transcription regulator
Chain: B: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: the crystal structure of tetr transcriptional regulator from2 streptococcus agalactiae 2603v
110c3crjC_



not modelled 99.7 15 PDB header:transcription regulator
Chain: C: PDB Molecule:transcription regulator;
PDBTitle: crystal structure of a tetr transcription regulator from haloarcula2 marismortui atcc 43049
111c2iu5A_



not modelled 99.7 12 PDB header:transcription
Chain: A: PDB Molecule:hth-type dhaklm operon transcriptional activator dhas;
PDBTitle: dihydroxyacetone kinase operon activator dhas
112c2g7lA_



not modelled 99.7 12 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative transcription regulator sco7704 from2 streptomyces coelicor
113c3ni7A_



not modelled 99.7 16 PDB header:transcription regulator
Chain: A: PDB Molecule:bacterial regulatory proteins, tetr family;
PDBTitle: crystal structure of the tetr transcriptional regulator from2 nitrosomonas europaea atcc 19718
114c2hxiA_



not modelled 99.7 15 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator from streptomyces coelicolor a3(2)
115c3egqB_



not modelled 99.7 16 PDB header:transcription
Chain: B: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: crystal structure of a tetr-family transcriptional regulator (af_1817)2 from archaeoglobus fulgidus at 2.55 a resolution
116c2vprA_



not modelled 99.7 15 PDB header:transcription
Chain: A: PDB Molecule:tetracycline resistance repressor protein;
PDBTitle: tet repressor class h in complex with 5a,6-2 anhydrotetracycline-mg
117c2qkoA_



not modelled 99.7 18 PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, tetr family protein;
PDBTitle: crystal structure of transcriptional regulator rha06399 from2 rhodococcus sp. rha1
118c2g7gA_



not modelled 99.7 19 PDB header:transcription
Chain: A: PDB Molecule:rha04620, putative transcriptional regulator;
PDBTitle: the crystal structure of the putative transcriptional regulator2 rha04620 from rhodococcus sp. rha1
119d2oi8a1



not modelled 99.6 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
120c2w53B_



not modelled 99.6 16 PDB header:transcription
Chain: B: PDB Molecule:repressor;
PDBTitle: structure of smet, the repressor of the stenotrophomonas2 maltophilia multidrug efflux pump smedef.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0