Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP47768
DateTue Jul 17 17:05:10 BST 2012
Unique Job IDa484637e4f5d2acd

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1smyc_
Top template information
Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:RNA-polymerase beta
Confidence and coverage
Confidence:100.0% Coverage: 89%
1048 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLREGLIEMFRDISPIEDFTG
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   .........70.........80.........90.........100.........110.........120
Sequence  NLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLIIKETGEVKEQEVFMGDFPLMT
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   .........130.........140.........150.........160.........170.........180
Sequence  DTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGRENYDATIIPNRGAWLEYETDAKDVV
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   .........190.........200.........210.........220.........230.........240
Sequence  YVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLRNTLEKDGTENTEQALLEIYERL
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   .........250.........260.........270.........280.........290.........300
Sequence  RPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNKKLHLKHRLFNQKLAEPIVNTETG
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   .........310.........320.........330.........340.........350.........360
Sequence  EIVVEEGTVLDRRKIDEIMDVLESNANSEVFELHGSVIDEPVEIQSIKVYVPNDDEGRTT
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   .........370.........380.........390.........400.........410.........420
Sequence  TVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGELLQNQFR
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   .........430.........440.........450.........460.........470.........480
Sequence  IGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMDQANPLAELT
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   .........490.........500.........510.........520.........530.........540
Sequence  HKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFG
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   .........550.........560.........570.........580.........590.........600
Sequence  FIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCRFRGNNT
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Disorder  ??







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   .........610.........620.........630.........640.........650.........660
Sequence  VMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTG
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   .........670.........680.........690.........700.........710.........720
Sequence  MEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSG
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   .........730.........740.........750.........760.........770.........780
Sequence  TCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERL
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   .........790.........800.........810.........820.........830.........840
Sequence  VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAEVKDGDI
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   .........850.........860.........870.........880.........890.........900
Sequence  LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDT
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   .........910.........920.........930.........940.........950.........960
Sequence  LSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPL
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  GVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDG
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  RTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  WALEAYGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGL
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   .........1150.........1160.........1170.........1180...
Sequence  DVKVMDEQDNEIEMTDVDDDDVVERKVDLQQNDAPETQKEVTD
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1smy chain C

3D model

Region: 15 - 1156
Aligned: 1048
Modelled: 1060
Confidence: 100.0%
Identity: 54%
Fold: beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase
Family: RNA-polymerase beta

Phyre2

PDB 3iyd chain C

3D model

Region: 12 - 1147
Aligned: 1036
Modelled: 1036
Confidence: 100.0%
Identity: 58%
PDB header:transcription/dna
Chain: C: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex

Phyre2

PDB 1ynj chain C domain 1

3D model

Region: 15 - 1156
Aligned: 1046
Modelled: 1048
Confidence: 100.0%
Identity: 55%
Fold: beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase
Family: RNA-polymerase beta

Phyre2

PDB 2pmz chain B

3D model

Region: 12 - 1148
Aligned: 998
Modelled: 1011
Confidence: 100.0%
Identity: 29%
PDB header:translation, transferase
Chain: B: PDB Molecule:dna-directed rna polymerase subunit b;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus

Phyre2

PDB 3h0g chain N

3D model

Region: 15 - 1150
Aligned: 998
Modelled: 985
Confidence: 100.0%
Identity: 26%
PDB header:transcription
Chain: N: PDB Molecule:dna-directed rna polymerase ii subunit rpb2;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe

Phyre2

PDB 1twf chain B

3D model

Region: 14 - 1151
Aligned: 968
Modelled: 1010
Confidence: 100.0%
Identity: 25%
Fold: beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase
Family: RNA-polymerase beta

Phyre2

PDB 3mlq chain D

3D model

Region: 26 - 468
Aligned: 173
Modelled: 174
Confidence: 100.0%
Identity: 62%
PDB header:transferase/transcription
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain

Phyre2

PDB 3mlq chain B

3D model

Region: 29 - 467
Aligned: 169
Modelled: 170
Confidence: 100.0%
Identity: 63%
PDB header:transferase/transcription
Chain: B: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain

Phyre2

PDB 3tbi chain B

3D model

Region: 789 - 986
Aligned: 196
Modelled: 198
Confidence: 99.9%
Identity: 44%
PDB header:transcription
Chain: B: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of t4 gp33 bound to e. coli rnap beta-flap domain

Phyre2

PDB 3lti chain A

3D model

Region: 141 - 398
Aligned: 161
Modelled: 172
Confidence: 99.9%
Identity: 60%
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains

Phyre2

PDB 3qqc chain A

3D model

Region: 1077 - 1148
Aligned: 63
Modelled: 72
Confidence: 99.2%
Identity: 24%
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna
PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain

Phyre2

PDB 1r46 chain A domain 1

3D model

Region: 938 - 962
Aligned: 25
Modelled: 25
Confidence: 47.4%
Identity: 16%
Fold: Glycosyl hydrolase domain
Superfamily: Glycosyl hydrolase domain
Family: alpha-Amylases, C-terminal beta-sheet domain

Phyre2

PDB 1zq1 chain C domain 1

3D model

Region: 1131 - 1142
Aligned: 12
Modelled: 12
Confidence: 36.0%
Identity: 42%
Fold: GatB/YqeY motif
Superfamily: GatB/YqeY motif
Family: GatB/GatE C-terminal domain-like

Phyre2

PDB 1n26 chain A domain 2

3D model

Region: 927 - 962
Aligned: 36
Modelled: 36
Confidence: 31.4%
Identity: 19%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Fibronectin type III
Family: Fibronectin type III

Phyre2

PDB 1d02 chain A

3D model

Region: 940 - 957
Aligned: 18
Modelled: 18
Confidence: 30.3%
Identity: 17%
Fold: Restriction endonuclease-like
Superfamily: Restriction endonuclease-like
Family: Restriction endonuclease MunI

Phyre2

PDB 1nbw chain A domain 1

3D model

Region: 748 - 785
Aligned: 37
Modelled: 38
Confidence: 27.4%
Identity: 14%
Fold: The "swivelling" beta/beta/alpha domain
Superfamily: Swiveling domain of dehydratase reactivase alpha subunit
Family: Swiveling domain of dehydratase reactivase alpha subunit

Phyre2

PDB 1uj4 chain A domain 2

3D model

Region: 1124 - 1152
Aligned: 29
Modelled: 29
Confidence: 27.3%
Identity: 24%
Fold: Ferredoxin-like
Superfamily: D-ribose-5-phosphate isomerase (RpiA), lid domain
Family: D-ribose-5-phosphate isomerase (RpiA), lid domain

Phyre2

PDB 2gti chain A

3D model

Region: 1021 - 1084
Aligned: 63
Modelled: 62
Confidence: 26.9%
Identity: 16%
PDB header:viral protein
Chain: A: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: mutation of mhv coronavirus non-structural protein nsp15 (f307l)

Phyre2

PDB 1gm5 chain A domain 4

3D model

Region: 926 - 945
Aligned: 20
Modelled: 20
Confidence: 23.9%
Identity: 20%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Tandem AAA-ATPase domain

Phyre2

PDB 1uj6 chain A

3D model

Region: 1087 - 1152
Aligned: 65
Modelled: 65
Confidence: 23.2%
Identity: 15%
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate

Phyre2
1

d1smyc_
2

c3iydC_
3

d1ynjc1
4

c2pmzB_
5

c3h0gN_
6

d1twfb_
7

c3mlqD_
8

c3mlqB_
9

c3tbiB_
10

c3ltiA_
11

c3qqcA_
12

d1r46a1
13

d1zq1c1
14

d1n26a2
15

d1d02a_
16

d1nbwa1
17

d1uj4a2
18

c2gtiA_
19

d1gm5a4
20

c1uj6A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1smyc_



100.0 54 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:RNA-polymerase beta
2c3iydC_



100.0 58 PDB header:transcription/dna
Chain: C: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex
3d1ynjc1



100.0 55 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:RNA-polymerase beta
4c2pmzB_



100.0 29 PDB header:translation, transferase
Chain: B: PDB Molecule:dna-directed rna polymerase subunit b;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
5c3h0gN_



100.0 26 PDB header:transcription
Chain: N: PDB Molecule:dna-directed rna polymerase ii subunit rpb2;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
6d1twfb_



100.0 25 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:RNA-polymerase beta
7c3mlqD_



100.0 62 PDB header:transferase/transcription
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain
8c3mlqB_



100.0 63 PDB header:transferase/transcription
Chain: B: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain
9c3tbiB_



99.9 44 PDB header:transcription
Chain: B: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of t4 gp33 bound to e. coli rnap beta-flap domain
10c3ltiA_



99.9 60 PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains
11c3qqcA_



99.2 24 PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna
PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain
12d1r46a1



47.4 16 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
13d1zq1c1



36.0 42 Fold:GatB/YqeY motif
Superfamily:GatB/YqeY motif
Family:GatB/GatE C-terminal domain-like
14d1n26a2



31.4 19 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
15d1d02a_



30.3 17 Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease MunI
16d1nbwa1



27.4 14 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Swiveling domain of dehydratase reactivase alpha subunit
Family:Swiveling domain of dehydratase reactivase alpha subunit
17d1uj4a2



27.3 24 Fold:Ferredoxin-like
Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain
Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
18c2gtiA_



26.9 16 PDB header:viral protein
Chain: A: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: mutation of mhv coronavirus non-structural protein nsp15 (f307l)
19d1gm5a4



23.9 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
20c1uj6A_



23.2 15 PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate
21d2d0oa1



not modelled 21.9 13 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Swiveling domain of dehydratase reactivase alpha subunit
Family:Swiveling domain of dehydratase reactivase alpha subunit
22c3lvwA_



not modelled 21.4 12 PDB header:ligase
Chain: A: PDB Molecule:glutamate--cysteine ligase;
PDBTitle: glutathione-inhibited scgcl
23c3mjhD_



not modelled 21.4 50 PDB header:protein transport
Chain: D: PDB Molecule:early endosome antigen 1;
PDBTitle: crystal structure of human rab5a in complex with the c2h2 zinc finger2 of eea1
24c3kdeC_



not modelled 21.2 16 PDB header:dna binding protein/dna
Chain: C: PDB Molecule:transposable element p transposase;
PDBTitle: crystal structure of the thap domain from d. melanogaster p-element2 transposase in complex with its natural dna binding site
25d1lk5a2



not modelled 21.2 12 Fold:Ferredoxin-like
Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain
Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
26c3cwiA_



not modelled 21.1 22 PDB header:biosynthetic protein
Chain: A: PDB Molecule:thiamine-biosynthesis protein this;
PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137
27c2c2lD_



not modelled 20.6 24 PDB header:chaperone
Chain: D: PDB Molecule:carboxy terminus of hsp70-interacting protein;
PDBTitle: crystal structure of the chip u-box e3 ubiquitin ligase
28d1y4oa1



not modelled 20.0 47 Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
29d1ujpa_



not modelled 19.8 26 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
30c2db3D_



not modelled 19.8 43 PDB header:hydrolase/rna
Chain: D: PDB Molecule:atp-dependent rna helicase vasa;
PDBTitle: structural basis for rna unwinding by the dead-box protein2 drosophila vasa
31d2eyqa5



not modelled 19.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
32c2q8nB_



not modelled 19.0 18 PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of glucose-6-phosphate isomerase (ec2 5.3.1.9) (tm1385) from thermotoga maritima at 1.82 a3 resolution
33c1nbwA_



not modelled 18.6 16 PDB header:hydrolase
Chain: A: PDB Molecule:glycerol dehydratase reactivase alpha subunit;
PDBTitle: glycerol dehydratase reactivase
34d1jbja1



not modelled 18.2 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
35c2pjmA_



not modelled 17.7 21 PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii
36d1xiwb_



not modelled 16.9 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
37d1cf2o2



not modelled 16.6 34 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
38d1zcea1



not modelled 16.6 17 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:Atu2648/PH1033-like
39d1prtc1



not modelled 15.8 19 Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
40d1prtb1



not modelled 15.5 19 Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
41c2fyuE_



not modelled 15.5 43 PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit,
PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
42d1sy6a1



not modelled 15.5 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
43c3l7oB_



not modelled 15.4 15 PDB header:isomerase
Chain: B: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159
44c2g5iB_



not modelled 14.9 17 PDB header:ligase
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase
PDBTitle: structure of trna-dependent amidotransferase gatcab2 complexed with adp-alf4
45d1xmwa2



not modelled 14.8 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
46c1bcpH_



not modelled 13.7 19 PDB header:toxin
Chain: H: PDB Molecule:pertussis toxin;
PDBTitle: binary complex of pertussis toxin and atp
47c3bxzA_



not modelled 13.2 33 PDB header:transport protein
Chain: A: PDB Molecule:preprotein translocase subunit seca;
PDBTitle: crystal structure of the isolated dead motor domains from2 escherichia coli seca
48d1m5ha1



not modelled 12.4 42 Fold:Ferredoxin-like
Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
49d1tf5a4



not modelled 12.2 33 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
50d1m0sa2



not modelled 12.2 19 Fold:Ferredoxin-like
Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain
Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
51d1m5sa1



not modelled 12.1 42 Fold:Ferredoxin-like
Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
52d1ftra1



not modelled 12.1 46 Fold:Ferredoxin-like
Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
53c2uv0G_



not modelled 12.0 25 PDB header:transcription
Chain: G: PDB Molecule:transcriptional activator protein lasr;
PDBTitle: structure of the p. aeruginosa lasr ligand-binding domain2 bound to its autoinducer
54d2d6fc2



not modelled 11.8 46 Fold:DCoH-like
Superfamily:GAD domain-like
Family:GAD domain
55c3c4iA_



not modelled 11.8 13 PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding protein hu homolog;
PDBTitle: crystal structure analysis of n terminal region containing the2 dimerization domain and dna binding domain of hu protein(histone like3 protein-dna binding) from mycobacterium tuberculosis [h37rv]
56c1gjjA_



not modelled 11.6 33 PDB header:membrane protein
Chain: A: PDB Molecule:lap2;
PDBTitle: n-terminal constant region of the nuclear envelope protein2 lap2
57d1dcza_



not modelled 11.5 33 Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
58c3u5cI_



not modelled 11.3 22 PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s8-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome a
59c1pd7B_



not modelled 11.0 60 PDB header:transcription
Chain: B: PDB Molecule:mad1;
PDBTitle: extended sid of mad1 bound to the pah2 domain of msin3b
60d2gtia2



not modelled 10.8 10 Fold:EndoU-like
Superfamily:EndoU-like
Family:Nsp15 C-terminal domain-like
61c3dlaD_



not modelled 10.5 14 PDB header:ligase
Chain: D: PDB Molecule:glutamine-dependent nad(+) synthetase;
PDBTitle: x-ray crystal structure of glutamine-dependent nad+ synthetase from2 mycobacterium tuberculosis bound to naad+ and don
62c1jbjA_



not modelled 10.4 18 PDB header:immune system
Chain: A: PDB Molecule:cd3 epsilon and gamma ectodomain fragment
PDBTitle: cd3 epsilon and gamma ectodomain fragment complex in single-2 chain construct
63c6paxA_



not modelled 10.4 22 PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeobox protein pax-6;
PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
64c2vb0A_



not modelled 10.1 21 PDB header:hydrolase
Chain: A: PDB Molecule:polyprotein 3bcd;
PDBTitle: crystal structure of coxsackievirus b3 proteinase 3c
65d1flja_



not modelled 9.8 25 Fold:Carbonic anhydrase
Superfamily:Carbonic anhydrase
Family:Carbonic anhydrase
66c1lk5C_



not modelled 9.8 14 PDB header:isomerase
Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase;
PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii
67c3qp1A_



not modelled 9.7 30 PDB header:transcription
Chain: A: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir ligand-binding domain bound to the native2 ligand c6-hsl
68d1aola_



not modelled 9.7 23 Fold:ENV polyprotein, receptor-binding domain
Superfamily:ENV polyprotein, receptor-binding domain
Family:ENV polyprotein, receptor-binding domain
69c1m1jA_



not modelled 9.7 50 PDB header:blood clotting
Chain: A: PDB Molecule:fibrinogen alpha subunit;
PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands
70d1o8ba2



not modelled 9.5 19 Fold:Ferredoxin-like
Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain
Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
71c2f1mA_



not modelled 9.4 20 PDB header:transport protein
Chain: A: PDB Molecule:acriflavine resistance protein a;
PDBTitle: conformational flexibility in the multidrug efflux system protein acra
72c2nu9E_



not modelled 9.3 21 PDB header:ligase
Chain: E: PDB Molecule:succinyl-coa synthetase beta chain;
PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form
73d1wgma_



not modelled 9.2 11 Fold:RING/U-box
Superfamily:RING/U-box
Family:U-box
74d1px5a1



not modelled 9.1 28 Fold:PAP/OAS1 substrate-binding domain
Superfamily:PAP/OAS1 substrate-binding domain
Family:2'-5'-oligoadenylate synthetase 1, OAS1, second domain
75d2f3na1



not modelled 9.1 13 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
76d1b7go2



not modelled 9.0 23 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
77c2p5zX_



not modelled 8.9 17 PDB header:structural genomics, unknown function
Chain: X: PDB Molecule:type vi secretion system component;
PDBTitle: the e. coli c3393 protein is a component of the type vi secretion2 system and exhibits structural similarity to t4 bacteriophage tail3 proteins gp27 and gp5
78d1y5ic1



not modelled 8.9 15 Fold:Heme-binding four-helical bundle
Superfamily:Respiratory nitrate reductase 1 gamma chain
Family:Respiratory nitrate reductase 1 gamma chain
79c2oy7A_



not modelled 8.8 11 PDB header:membrane protein
Chain: A: PDB Molecule:outer surface protein a;
PDBTitle: the crystal structure of ospa mutant
80d2hz5a1



not modelled 8.8 47 Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
81d1jqna_



not modelled 8.7 44 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate carboxylase
82d2p5zx2



not modelled 8.6 17 Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:Baseplate protein-like
83d2pxyd2



not modelled 8.6 44 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
84d1h59b_



not modelled 8.5 38 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Growth factor receptor domain
Family:Growth factor receptor domain
85d2guja1



not modelled 8.5 25 Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:XkdM-like
86c1m0sA_



not modelled 8.5 16 PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: northeast structural genomics consortium (nesg id ir21)
87c2j8qB_



not modelled 8.5 40 PDB header:nuclear protein
Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5;
PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion.
88c1lkzB_



not modelled 8.3 14 PDB header:isomerase
Chain: B: PDB Molecule:ribose 5-phosphate isomerase a;
PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli.
89c3ghgD_



not modelled 8.3 33 PDB header:blood clotting
Chain: D: PDB Molecule:fibrinogen alpha chain;
PDBTitle: crystal structure of human fibrinogen
90d2pwwa1



not modelled 8.3 8 Fold:TBP-like
Superfamily:YugN-like
Family:YugN-like
91d1m6ia3



not modelled 8.2 43 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
92c2aujD_



not modelled 8.1 33 PDB header:transferase
Chain: D: PDB Molecule:dna-directed rna polymerase beta' chain;
PDBTitle: structure of thermus aquaticus rna polymerase beta'-subunit2 insert
93d1ooha_



not modelled 8.1 33 Fold:EF Hand-like
Superfamily:Insect pheromone/odorant-binding proteins
Family:Insect pheromone/odorant-binding proteins
94d1pfva2



not modelled 8.0 40 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
95d1u1ia1



not modelled 8.0 29 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
96d1k8ba_



not modelled 8.0 36 Fold:Ribosome binding domain-like
Superfamily:Translation initiation factor 2 beta, aIF2beta, N-terminal domain
Family:Translation initiation factor 2 beta, aIF2beta, N-terminal domain
97c1p84E_



not modelled 8.0 43 PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
98c2kkpA_



not modelled 8.0 36 PDB header:dna binding protein
Chain: A: PDB Molecule:phage integrase;
PDBTitle: solution nmr structure of the phage integrase sam-like2 domain from moth 1796 from moorella thermoacetica.3 northeast structural genomics consortium target mtr39k4 (residues 64-171).
99d1uoua3



not modelled 7.9 16 Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain

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