PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2p5zX_

Fold library id	PDB Header	Molecule	Title
c2p5zX_	PDB header: structural genomics, unknown function	Chain: X: PDB Molecule: type vi secretion system component;	PDBTitle: the e. coli c3393 protein is a component of the type vi2 secretion system and exhibits structural similarity to t43 bacteriophage tail proteins gp27 and gp5

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Added to library: Tue Mar 16 13:29:30 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence H K L K I R G L Q S P V D V L T F E G R E Q L S T P F R Y D I Q F T S S D K A I A P E S V L M Q D G A F S L T A A L R T L H G V I T G F K H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T T S
S
T T
G G G T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L S S S Q D E A R Y E V R L E P R M A L L T R S R Q N A I Y Q N Q T V P Q I V E K I L R E R H Q M R G Q D F V F N L K S E Y P A R E Q V M Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
G G G G G G G
B
T T T
S S S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y G E D D L T F V S R L L S E V G I W F R F A T D A R L K I E V I E F Y D D Q S G Y E R G L T L P L R T E A V W G L N T A Y S V S G A F Y A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T
T T T T S S G G G S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence R I R H E R Y L N E Q A I L K G Q S T S S L L M P G L E I K V Q G D D A P A V F R K G V L I T G V T T S A A R D R S Y E L T F T A I P Y S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
T T
S S S
T T T
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence R Y G Y R P A L I P R P V M A G T L P A R V T S D I Y A H I D K D G R Y R V N L D F R D T W K P G Y E S L W V R L L A G T E V S I A F E E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S
B
T T
B
T T
S S
G G G

. . . . . . . . . 360 .

Sequence N P D R P Y I A G V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S

Download: PDB structure FASTA sequence
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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	H	K	L	K	I	R	G	L	Q	S	P	V	D	V	L	T	F	E	G	R	E	Q	L	S	T	P	F	R	Y	D	I	Q	F	T	S	S	D	K	A	I	A	P	E	S	V	L	M	Q	D	G	A	F	S	L	T	A	A	L	R	T	L	H	G	V	I	T	G	F	K	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T			S													T	T	S											S		T	T			G	G	G	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	S	S	S	Q	D	E	A	R	Y	E	V	R	L	E	P	R	M	A	L	L	T	R	S	R	Q	N	A	I	Y	Q	N	Q	T	V	P	Q	I	V	E	K	I	L	R	E	R	H	Q	M	R	G	Q	D	F	V	F	N	L	K	S	E	Y	P	A	R	E	Q	V	M	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S											G	G	G	G	G	G	G				B																		T	T	T				S	S	S						S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	G	E	D	D	L	T	F	V	S	R	L	L	S	E	V	G	I	W	F	R	F	A	T	D	A	R	L	K	I	E	V	I	E	F	Y	D	D	Q	S	G	Y	E	R	G	L	T	L	P	L	R	T	E	A	V	W	G	L	N	T	A	Y	S	V	S	G	A	F	Y	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S															T									T	T	T	T								S	S	G	G	G	S																									S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	R	I	R	H	E	R	Y	L	N	E	Q	A	I	L	K	G	Q	S	T	S	S	L	L	M	P	G	L	E	I	K	V	Q	G	D	D	A	P	A	V	F	R	K	G	V	L	I	T	G	V	T	T	S	A	A	R	D	R	S	Y	E	L	T	F	T	A	I	P	Y	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T										S	S			T	T								S	S	S																			T	T	T													S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	R	Y	G	Y	R	P	A	L	I	P	R	P	V	M	A	G	T	L	P	A	R	V	T	S	D	I	Y	A	H	I	D	K	D	G	R	Y	R	V	N	L	D	F	R	D	T	W	K	P	G	Y	E	S	L	W	V	R	L	L	A	G	T	E	V	S	I	A	F	E	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S															S											S			B		T	T													B		T	T										S	S								G	G	G
	.	.	.	.	.	.	.	.	.	360	.
Sequence	N	P	D	R	P	Y	I	A	G	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S