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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3iydC_

Fold library idPDB HeaderMoleculeTitle
c3iydC_PDB header: transcription/dnaChain: C: PDB Molecule: dna-directed rna polymerase subunit beta;PDBTitle: three-dimensional em structure of an intact activator-2 dependent transcription initiation complex


Added to library: Sat Aug 28 15:55:34 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV
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Known secondary structure (DSSP)



B





SS



TTSTGGGTS
SSS
SSS
S



SSS









S
 .........80.........90.........100.........110.........120.........130.........140
Sequence FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQL
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Known secondary structure (DSSP) S
STTSTTTT






TTT

SSSSSS









TTT


BTTB



B
 .........150.........160.........170.........180.........190.........200.........210
Sequence HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQ
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Known secondary structure (DSSP)

SB




SS
SS


SSSSS

B

SSS








SSS



SSS




TTTTS

TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence ILDLFFEKVDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA
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Known secondary structure (DSSP) SSSSSTTS
S

TTTTTTS


S


STT


TTT

SS




SSSS


GGGGTTTTSSS


TT
TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN
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Known secondary structure (DSSP) SSGGGSSSSTTT
SSTTSSSTTTTTTTTSS


SSS

SS

TTTS





TT
GGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNP
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Known secondary structure (DSSP)

TTGGGTTTTTTTT

SSSSSSTTS

TTTTTTTSSSSTT


TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP
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Known secondary structure (DSSP) SS

BS


TTT


S

TTTSS

GGGTTTB
SS



STTTTTS

B
TT

SSSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence YRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
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Known secondary structure (DSSP)
TT
SS


STTTTTS
B

TTS
B
STT
BS
SS


BSSS
B

S
SSS


S
SGGG
 .........570.........580.........590.........600.........610.........620.........630
Sequence VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDAS
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Known secondary structure (DSSP) S
SSTTSSS
STTS
TTTTTTGGG



SS



S
S
STT
S
B
SS
B

SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence RIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM
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Known secondary structure (DSSP)

SSS
SBTTBS




S


TTS







SSS
B
TT
BS
TT
BTTB


S
 .........710.........720.........730.........740.........750.........760.........770
Sequence RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI
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Known secondary structure (DSSP)

B



TTTSSSSSTT








SS


B

S



S
STT
 .........780.........790.........800.........810.........820.........830.........840
Sequence VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE
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Known secondary structure (DSSP)
S




SS

SS

B


STT


TTTTS




SS







SS


B



SS
SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence KDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI
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Known secondary structure (DSSP)



TT


B



TT


SS



STT

B
SS



S





TTT


 .........920.........930.........940.........950.........960.........970.........980
Sequence GQILETHLGMAAKGIGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML
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Known secondary structure (DSSP)
T





TT
S

TTSSSS
SSS

B
SSS

B
SS
B


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK
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Known secondary structure (DSSP) B



GGG




S


B
SSS

B


SSS






GGGTTTT

TTTTTTTS
S
 .........1060.........1070.........1080.........
Sequence MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE
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Known secondary structure (DSSP) TTTTTT








TTTT








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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