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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2pmzB_

Fold library idPDB HeaderMoleculeTitle
c2pmzB_PDB header: translation, transferaseChain: B: PDB Molecule: dna-directed rna polymerase subunit b;PDBTitle: archaeal rna polymerase from sulfolobus solfataricus


Added to library: Tue Mar 16 13:33:58 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LTIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIPGLKVRLGKIRIGKPRVRESD
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Known secondary structure (DSSP)

STTS
TT
TTTSSTTTT
S
SB



TTT












SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence RGEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGED
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Known secondary structure (DSSP) S





TTTT




B


BSSS

S


B



B



TT
TTSGGGG

TS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIERLKDGTFHVSF
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Known secondary structure (DSSP) TT






GGGT





S


S
SSS



SSS



TTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence PAVPGKIPFVILMRALGILTDRDIVYAVSLDPEVQNELFPSLEQASSIANVDDALDFIGSRVAIGQKREN
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Known secondary structure (DSSP) SSS
STT

S
SS
STTGGGSTGGGG




SSSTTTTTSSTTS
GGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence RIEKAQQIIDKYFLPHLGTSAEDRKKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLF
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Known secondary structure (DSSP) TTSSS

SS

STTSSGGGTTTTT
SS



TT
TTS


 .........360.........370.........380.........390.........400.........410.........420
Sequence RVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATGNWVGGRTGVSQLLDRTNWLSMLS
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Known secondary structure (DSSP)
SSSS


GGGTS
TTTTTTTTSS


SSS

S



S
 .........430.........440.........450.........460.........470.........480.........490
Sequence HLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGV
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Known secondary structure (DSSP)
B

SS


S


TTSS

SS
TTTB
SS


SSTTTTTSB
B
SS




STTTTTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence VPVEEVILKWSKVILNGRLIGYYQDGGELANKIRERRRKGEISDEVNVGHIVTDFINEVHVNCDSGRVRR
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Known secondary structure (DSSP) STT






SS
B

S

TTTTTTSS
TT



SS





 .........570.........580.........590.........600.........610.........620.........630
Sequence PLIIVSNGNPLVTIEDIEKLESGAITFDDLVRQGKIEYLDAEEEENAYVALEPNDLTPDHTHLEIWSPAI
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Known secondary structure (DSSP) B
SSS



TTTS
SS
STTS
STTGGG

B
SSGGGG
S

SB

S
TTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence LGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRP
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Known secondary structure (DSSP) S
SGGGS
SS
TTB
GGGB
S


TTTTT


SS

SS



SSB
STTTTTSGGGS
 .........710.........720.........730.........740.........750.........760.........770
Sequence AGNNAILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPEAGVRGYKGKE
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Known secondary structure (DSSP) S
BB
S

TT
STTT
B
BBSTTTT



S

SSSS




S


SSSSB
S
SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence YYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDL
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Known secondary structure (DSSP)
GGGS
TTSB

SS

TT



B




B




TT


TT



 .........850.........860.........870.........880.........890.........900.........910
Sequence RIPTIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNI
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Known secondary structure (DSSP)



TT
B
TTS


BB


B
TTTS
TTS


SB


GGGSGGG
BTTSSSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence VDATPFYKTPIEQLQNEILRYGYLPDATEVVYDGRTGQKIKSRIYFGVVYYQKLHHMVADKLHARARGPV
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Known secondary structure (DSSP)
B

TT
SS
TTS
TT
B


TTTT
SS

BB

BS

GGG




SS

B
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence QILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTMIYVCDQCGYIGWYDKNKNKYVC
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Known secondary structure (DSSP)
TTT

B

BGGGTB




GGGTTTT
TTTTTTTTTTTT


TTT

S




GGG



 .........1060.........1070.........1080.........1090
Sequence PIHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLVLEDKV
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Known secondary structure (DSSP) SS
TTTT


TT











Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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