PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1uj6A_

Fold library id	PDB Header	Molecule	Title
c1uj6A_	PDB header: isomerase	Chain: A: PDB Molecule: ribose 5-phosphate isomerase;	PDBTitle: crystal structure of thermus thermophilus ribose-5-2 phosphate isomerase complexed with arabinose-5-phosphate

Links to external resources
Added to library: Tue Mar 16 12:01:56 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R P L E S Y K K E A A H A A I A Y V Q D G X V V G L G T G S T A R Y A V L E L A R R L R E G E L K G V V G V P T S R A T E E L A K R E G I P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
T T
S T T S S
S
S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L V D L P P E G V D L A I D G A D E I A P G L A L I K G X G G A L L R E K I V E R V A K E F I V I A D H T K K V P V L G R G P V P V E I V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
T T
S G G G
T T S
T G G G B
S S S
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F G Y R A T L K A I A D L G G E P E L R X D G D E F Y F T D G G H L I A D C R F G P I G D P L G L H R A L L E I P G V V E T G L F V G X A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T
T T
T T S
S
S
T S T T S
S
S

. . . . . . . . . 220 . . . . .

Sequence R A L V A G P F G V E E L L P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	P	L	E	S	Y	K	K	E	A	A	H	A	A	I	A	Y	V	Q	D	G	X	V	V	G	L	G	T	G	S	T	A	R	Y	A	V	L	E	L	A	R	R	L	R	E	G	E	L	K	G	V	V	G	V	P	T	S	R	A	T	E	E	L	A	K	R	E	G	I	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T													T	T			T	T								S																T	T	S	S		S						S	S										T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	V	D	L	P	P	E	G	V	D	L	A	I	D	G	A	D	E	I	A	P	G	L	A	L	I	K	G	X	G	G	A	L	L	R	E	K	I	V	E	R	V	A	K	E	F	I	V	I	A	D	H	T	K	K	V	P	V	L	G	R	G	P	V	P	V	E	I	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B					T	T										S				G	G	G						T	T	S											T										G	G	G	B		S	S	S		S	S								S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	G	Y	R	A	T	L	K	A	I	A	D	L	G	G	E	P	E	L	R	X	D	G	D	E	F	Y	F	T	D	G	G	H	L	I	A	D	C	R	F	G	P	I	G	D	P	L	G	L	H	R	A	L	L	E	I	P	G	V	V	E	T	G	L	F	V	G	X	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T										T	T	T									T	T						T	T	S										S		S											T	S	T	T					S				S			S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Sequence	R	A	L	V	A	G	P	F	G	V	E	E	L	L	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T