PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3mlqD_

Fold library id	PDB Header	Molecule	Title
c3mlqD_	PDB header: transferase/transcription	Chain: D: PDB Molecule: dna-directed rna polymerase subunit beta;	PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain

Links to external resources
Added to library: Thu Oct 21 16:15:21 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M P L T E I Q V E S Y K K A L Q A D V P P E K R E N V G I Q A A F K E T F P I E E G D G K G G L V L D F L E Y R I G D P P F S Q D E C R E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S
G G G
S
S
S S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D L T Y Q A P L Y A R L Q L I H K D T G L I K E D E V F L G H L P L M T E D G S F I I N G A D R V I V S Q G G R T V G E L M A D Q F R V G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T T
T T S
T T
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . .

Sequence A R L A R G V R E R M V M G S P D T L T P A K L V N S R P L E A A L R E F F S R S Q L S Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	P	L	T	E	I	Q	V	E	S	Y	K	K	A	L	Q	A	D	V	P	P	E	K	R	E	N	V	G	I	Q	A	A	F	K	E	T	F	P	I	E	E	G	D	G	K	G	G	L	V	L	D	F	L	E	Y	R	I	G	D	P	P	F	S	Q	D	E	C	R	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T	T	S		G	G	G			S																				S															S	S								T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	L	T	Y	Q	A	P	L	Y	A	R	L	Q	L	I	H	K	D	T	G	L	I	K	E	D	E	V	F	L	G	H	L	P	L	M	T	E	D	G	S	F	I	I	N	G	A	D	R	V	I	V	S	Q	G	G	R	T	V	G	E	L	M	A	D	Q	F	R	V	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																T	T	T	T																	T	T	S					T	T									S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Sequence	A	R	L	A	R	G	V	R	E	R	M	V	M	G	S	P	D	T	L	T	P	A	K	L	V	N	S	R	P	L	E	A	A	L	R	E	F	F	S	R	S	Q	L	S	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S		G	G	G																						T