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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3h0gN_

Fold library idPDB HeaderMoleculeTitle
c3h0gN_PDB header: transcriptionChain: N: PDB Molecule: dna-directed rna polymerase ii subunit rpb2;PDBTitle: rna polymerase ii from schizosaccharomyces pombe


Added to library: Sat Aug 28 22:08:28 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTINFGQIYLSRPTMTEADGSTTT
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Known secondary structure (DSSP)



T
TT
SSSSSSSSSTTTTSSTT










B
TTS
B

 .........80.........90.........100.........110.........120.........130.........140
Sequence MFPQEARLRNLTYSSPLYVDMRKEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFI
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Known secondary structure (DSSP)

TTTTTTT






SS




SSSTTSSSSS

TT

TT




B
 .........150.........160.........170.........180.........190.........200.........210
Sequence INGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQTIRATL
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Known secondary structure (DSSP) GGGS
B


B





S








SSS











SSS













TTS
S






 .........220.........230.........240.........250.........260.........270.........280
Sequence PYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFVIQDKDIALDYIGKRGSTTGV
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Known secondary structure (DSSP) TTS
S


STTTT

STT

SS

TTTSS

SSTT


SSS


 .........290.........300.........310.........320.........330.........340.........350
Sequence TREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLL
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Known secondary structure (DSSP)
TTTSS
SS

SSS

SSTTSS



TT
SSS




 .........360.........370.........380.........390.........400.........410.........420
Sequence ASLFRMLFRKMTRDVYKYMQKCVETNREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVL
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Known secondary structure (DSSP) TT

S


TTSS
STTTSSSS
SSTTSS

S



S

B
 .........430.........440.........450.........460.........470.........480.........490
Sequence NRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAP
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Known secondary structure (DSSP)

SSTTBB

S

SS

SSSSSS

GGGTTT


S


SSSSTTTS
B

SS

B




SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence IIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVRDIREKE
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Known secondary structure (DSSP) SSS



S


SSSSSSS



STT





S
TTTSS
TT





TTT

 .........570.........580.........590.........600.........610.........620.........630
Sequence LRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRFGWTALVSSGLIEYLDA
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Known secondary structure (DSSP)




SS

B




SS
SSSS


SS
T


S
TT


SSTTTTTTTS

T
 .........640.........650.........660.........670.........680.........690.........700
Sequence EEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPHVHAWTHCEIHPAMILGILASIIPFPD
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Known secondary structure (DSSP) TTGGG

S
TT





SS

SS




S

S

S
S
S
GGGSS
SSSTTSSSST
 .........710.........720.........730.........740.........750.........760.........770
Sequence HNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY
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Known secondary structure (DSSP) TS
STT

S


TTTTTS

SSSS



SSB
TTSTTTT
TTS
S


B


 .........780.........790.........800.........810.........820.........830.........840
Sequence SGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIA
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Known secondary structure (DSSP) SSSS
SS
TTTTT





SSS








TTS




S

GGG

TTSS

 .........850.........860.........870.........880.........890.........900.........910
Sequence PGTRVSGEDIIIGKTAPIQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFA
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Known secondary structure (DSSP) TT



TT






















TT






SSSS


B


TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence SRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGFEGDATPFTDVT
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Known secondary structure (DSSP)
TT



TTTS

BTTTB

S

GGGSTTS

SSSS



B

SS
S

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEG
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Known secondary structure (DSSP) TTTS
TTS
B

B
SSS

B
SS
B



S

STTT



SS

B
SSS
SB

S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence RSRDGGLRFGEMERDCQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFS
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Known secondary structure (DSSP) STT






T
TTTT

SSS






SSS




TTT

SS
 .........1130.........1140.........1150
Sequence QVYLPYAAKLLFQELMSMNIAPRLFTKNHK
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Known secondary structure (DSSP)

TTT






STT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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