PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1lk5C_

Fold library id	PDB Header	Molecule	Title
c1lk5C_	PDB header: isomerase	Chain: C: PDB Molecule: d-ribose-5-phosphate isomerase;	PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii

Links to external resources
Added to library: Tue Mar 16 13:26:26 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M N V E E M K K I A A K E A L K F I E D D M V I G L G T G S T T A Y F I K L L G E K L K R G E I S D I V G V P T S Y Q A K L L A I E H D I P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S S
S T S S
S S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I A S L D Q V D A I D V A V D G A D E V D P N L N L I K G R G A A L T M E K I I E Y R A G T F I V L V D E R K L V D Y L C Q K M P V P I E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
G G G S S
S
T T S
T T S
T G G G B
S S B T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I P Q A W K A I I E E L S I F N A K A E L R M G V N K D G P V I T D N G N F I I D A K F P R I D D P L D M E I E L N T I P G V I E N G I F A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T
B
S S S S S B
T T S
S
B S
T T S T T S

. . . . . . . . . 220 . . . . . . . . .

Sequence D I A D I V I V G T R E G V K K L E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	N	V	E	E	M	K	K	I	A	A	K	E	A	L	K	F	I	E	D	D	M	V	I	G	L	G	T	G	S	T	T	A	Y	F	I	K	L	L	G	E	K	L	K	R	G	E	I	S	D	I	V	G	V	P	T	S	Y	Q	A	K	L	L	A	I	E	H	D	I	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															G	G	G			S	S								S																	T	S	S		S						S	S										T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	A	S	L	D	Q	V	D	A	I	D	V	A	V	D	G	A	D	E	V	D	P	N	L	N	L	I	K	G	R	G	A	A	L	T	M	E	K	I	I	E	Y	R	A	G	T	F	I	V	L	V	D	E	R	K	L	V	D	Y	L	C	Q	K	M	P	V	P	I	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B			G	G	G	S	S										S				T	T	S						T	T	S											T										G	G	G	B		S	S	B	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	P	Q	A	W	K	A	I	I	E	E	L	S	I	F	N	A	K	A	E	L	R	M	G	V	N	K	D	G	P	V	I	T	D	N	G	N	F	I	I	D	A	K	F	P	R	I	D	D	P	L	D	M	E	I	E	L	N	T	I	P	G	V	I	E	N	G	I	F	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G											T	T							B		S	S	S	S	S	B				T	T	S									S		B	S										T	T	S	T	T					S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence	D	I	A	D	I	V	I	V	G	T	R	E	G	V	K	K	L	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S										T	T