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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: d1twfb_

Fold library idFoldSuperfamilyFamily
d1twfb_beta and beta-prime subunits of DNA dependent RNA-polymerasebeta and beta-prime subunits of DNA dependent RNA-polymeraseRNA-polymerase beta


Added to library: Tue Mar 16 13:22:50 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FEDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLIEISFGKIYVTKPMVNES
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Known secondary structure (DSSP)


TT



TTTT
TTT
B








S
 .........80.........90.........100.........110.........120.........130.........140
Sequence DGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMG
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Known secondary structure (DSSP) SS



TT













TTSTTSGGGT

TT

TT


 .........150.........160.........170.........180.........190.........200.........210
Sequence GYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIK
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Known secondary structure (DSSP)
STT

SS



TTSS


SSS




S
SS
SS

 .........220.........230.........240.........250.........260.........270.........280
Sequence ATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTA
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Known secondary structure (DSSP)
TT
SS
TT

S


TT
TTT

STTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence LGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAG
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Known secondary structure (DSSP) TTS
TSSTTT

SSS
TTSS



TT
GGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence PLLAQLFKTLFKKLTKDIFRYMQRTVELAINAKTITSGLKYALATGNWGAGVSQVLNRYTYSSTLSHLRR
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Known secondary structure (DSSP) S






T









SST
 .........430.........440.........450.........460.........470.........480.........490
Sequence TNTPIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQ
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Known secondary structure (DSSP)




TTS

GGGTTTB
SS


SGGGBTTB
TT






TT
GGG

GGG
 .........500.........510.........520.........530.........540.........550.........560
Sequence SPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDD
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Known secondary structure (DSSP)
TT
TTS
TSS
TT
TTTT

S



 .........570.........580.........590.........600.........610.........620.........630
Sequence ESLGHKELKVRKGHIAKLMATEYQDEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPDVDPAKRIRV
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Known secondary structure (DSSP)
TTSS
S






TTSTT

SSGGGG




TTS



 .........640.........650.........660.........670.........680.........690.........700
Sequence SHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQK
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Known secondary structure (DSSP)



S



S
GGGGS
TTGGGSSSGGGS
GGGB
B
S
TTTTT


SSS


 .........710.........720.........730.........740.........750.........760.........770
Sequence PLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSIT
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Known secondary structure (DSSP)
S
TTTTTTS




SSSTTTTTTTTT




S
TT

 .........780.........790.........800.........810.........820.........830.........840
Sequence ETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISSKRDASTPLRSTENGIVDQVLV
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Known secondary structure (DSSP)
S



SSS
B

SS
GGG

TTSB

TT

TT







BB



TT

 .........850.........860.........870.........880.........890.........900.........910
Sequence TTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVA
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Known secondary structure (DSSP)
SSS



TT

TTS

TTTS
TTS


S
GGGSTTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence HLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQR
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Known secondary structure (DSSP)
S


SSSS

TTTS
TTS

TTT

B
SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LRHMVDDKIHARARGPGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQF
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Known secondary structure (DSSP) BSS
GGGT












T


SS


SSS
SS

TTTT
 .........1060.........1070.........1080.........1090....
Sequence ECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDRSRDF
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Known secondary structure (DSSP) BTTTTBSSS

TT





S
SS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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