Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	E	Q	T	S	R	L	A	I	I	I	D	S	T	G	A	K	N	N	A	D	N	L	T	S	S	L	V	K	M	T	Q	A	G	E	T	A	A	N	S	A	G	K	V	T	K	A	T	E	D	E	K	N	A	L	A	K	L	K
Secondary structure
SS confidence
Disorder		?	?	?										?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	A	I	D	P	V	G	A	A	I	D	T	V	G	R	R	Y	S	E	L	K	K	F	F	D	K	G	L	I	D	K	E	E	Y	E	F	L	V	R	K	L	N	E	T	T	E	E	L	S	G	V	A	Q	A	Q	R	E	A	E	K
Secondary structure
SS confidence
Disorder																												?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	G	K	L	A	A	A	Q	Q	E	A	Q	A	Q	A	F	Q	R	M	L	D	K	I	D	P	L	A	A	A	L	R	N	L	E	Q	Q	H	D	E	L	N	A	A	F	A	S	G	K	I	N	G	S	Q	F	E	N	Y	S	R	K
Secondary structure
SS confidence
Disorder																																																		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	Q	E	T	R	R	E	L	T	G	E	A	Q	A	E	R	E	A	A	K	A	H	D	E	Q	V	V	A	L	Q	R	L	I	A	Q	L	D	P	V	G	T	A	F	N	R	L	V	E	Q	Q	K	Q	L	N	E	A	K	A	K	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		M	L	S	P	E	M	Y	E	E	L	S	G	K	L	R	A	M	R	S	E	L	E	V	T	Q	S	Q	L	S	K	T	G	M	S	A	K	Q	T	A	F	A	M	R	M	L	P	A	Q	M	T	D	I	V	V	G	L	S	T	G	Q
Secondary structure
SS confidence
Disorder			?	?																																																						?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Sequence		S	P	F	M	V	L	M	Q	Q	G	G	H	S	A	M	Q	E	T	R	I	A	S	L	P	V	T	A	I	P	A	G	M	K	I	P	C	V	T	A	G	S	A
Secondary structure
SS confidence
Disorder		?								?		?	?	?					?	?	?	?																?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1c1g chain A Region: 16 - 299 Aligned: 281 Modelled: 284 Confidence: 99.0% Identity: 6% PDB header:contractile protein Chain: A: PDB Molecule:tropomyosin; PDBTitle: crystal structure of tropomyosin at 7 angstroms resolution2 in the spermine-induced crystal form Phyre2 PDB 2ch7 chain A Region: 15 - 320 Aligned: 304 Modelled: 306 Confidence: 98.4% Identity: 10% PDB header:chemotaxis Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima Phyre2 PDB 2oev chain A Region: 21 - 266 Aligned: 246 Modelled: 246 Confidence: 97.6% Identity: 7% PDB header:protein transport Chain: A: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: crystal structure of alix/aip1 Phyre2 PDB 2efr chain B Region: 21 - 176 Aligned: 153 Modelled: 153 Confidence: 97.3% Identity: 12% PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain; PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution Phyre2 PDB 2oex chain B Region: 15 - 270 Aligned: 256 Modelled: 256 Confidence: 97.1% Identity: 8% PDB header:protein transport Chain: B: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: structure of alix/aip1 v domain Phyre2 PDB 1cii chain A Region: 7 - 320 Aligned: 314 Modelled: 314 Confidence: 96.9% Identity: 12% PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia Phyre2 PDB 3oja chain B Region: 143 - 288 Aligned: 144 Modelled: 146 Confidence: 96.3% Identity: 10% PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex Phyre2 PDB 1yvl chain B Region: 3 - 270 Aligned: 266 Modelled: 268 Confidence: 95.3% Identity: 9% PDB header:signaling protein Chain: B: PDB Molecule:signal transducer and activator of transcription PDBTitle: structure of unphosphorylated stat1 Phyre2 PDB 2d3e chain D Region: 20 - 150 Aligned: 128 Modelled: 131 Confidence: 95.3% Identity: 13% PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin Phyre2 PDB 3u59 chain C Region: 224 - 320 Aligned: 97 Modelled: 97 Confidence: 94.9% Identity: 6% PDB header:contractile protein Chain: C: PDB Molecule:tropomyosin beta chain; PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta Phyre2 PDB 2fxm chain B Region: 217 - 322 Aligned: 106 Modelled: 106 Confidence: 94.6% Identity: 8% PDB header:contractile protein Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform; PDBTitle: structure of the human beta-myosin s2 fragment Phyre2 PDB 2b9c chain A Region: 17 - 150 Aligned: 131 Modelled: 134 Confidence: 94.5% Identity: 9% PDB header:contractile protein Chain: A: PDB Molecule:striated-muscle alpha tropomyosin; PDBTitle: structure of tropomyosin's mid-region: bending and binding2 sites for actin Phyre2 PDB 1bg1 chain A Region: 24 - 196 Aligned: 173 Modelled: 173 Confidence: 94.5% Identity: 13% PDB header:transcription/dna Chain: A: PDB Molecule:protein (transcription factor stat3b); PDBTitle: transcription factor stat3b/dna complex Phyre2 PDB 3l9o chain A Region: 17 - 311 Aligned: 268 Modelled: 268 Confidence: 94.2% Identity: 8% PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome Phyre2 PDB 3g67 chain A Region: 30 - 297 Aligned: 210 Modelled: 210 Confidence: 94.0% Identity: 13% PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima Phyre2 PDB 3na7 chain A Region: 6 - 166 Aligned: 161 Modelled: 161 Confidence: 93.7% Identity: 10% PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 Phyre2 PDB 1bf5 chain A Region: 15 - 171 Aligned: 157 Modelled: 157 Confidence: 93.7% Identity: 8% PDB header:gene regulation/dna Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: tyrosine phosphorylated stat-1/dna complex Phyre2 PDB 3ol1 chain A Region: 17 - 107 Aligned: 91 Modelled: 91 Confidence: 93.7% Identity: 8% PDB header:structural protein Chain: A: PDB Molecule:vimentin; PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b Phyre2 PDB 3o0z chain D Region: 19 - 166 Aligned: 145 Modelled: 148 Confidence: 93.7% Identity: 11% PDB header:transferase Chain: D: PDB Molecule:rho-associated protein kinase 1; PDBTitle: crystal structure of a coiled-coil domain from human rock i Phyre2 PDB 3cwg chain A Region: 20 - 171 Aligned: 152 Modelled: 152 Confidence: 93.5% Identity: 11% PDB header:transcription Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: unphosphorylated mouse stat3 core fragment Phyre2 1 c1c1gA_ 2 c2ch7A_ 3 c2oevA_ 4 c2efrB_ 5 c2oexB_ 6 c1ciiA_ 7 c3ojaB_ 8 c1yvlB_ 9 c2d3eD_ 10 c3u59C_ 11 c2fxmB_ 12 c2b9cA_ 13 c1bg1A_ 14 c3l9oA_ 15 c3g67A_ 16 c3na7A_ 17 c1bf5A_ 18 c3ol1A_ 19 c3o0zD_ 20 c3cwgA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1c1gA_ 99.0 6 PDB header:contractile protein Chain: A: PDB Molecule:tropomyosin; PDBTitle: crystal structure of tropomyosin at 7 angstroms resolution2 in the spermine-induced crystal form 2 c2ch7A_ 98.4 10 PDB header:chemotaxis Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima 3 c2oevA_ 97.6 7 PDB header:protein transport Chain: A: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: crystal structure of alix/aip1 4 c2efrB_ 97.3 12 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain; PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution 5 c2oexB_ 97.1 8 PDB header:protein transport Chain: B: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: structure of alix/aip1 v domain 6 c1ciiA_ 96.9 12 PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia 7 c3ojaB_ 96.3 10 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 8 c1yvlB_ 95.3 9 PDB header:signaling protein Chain: B: PDB Molecule:signal transducer and activator of transcription PDBTitle: structure of unphosphorylated stat1 9 c2d3eD_ 95.3 13 PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin 10 c3u59C_ 94.9 6 PDB header:contractile protein Chain: C: PDB Molecule:tropomyosin beta chain; PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta 11 c2fxmB_ 94.6 8 PDB header:contractile protein Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform; PDBTitle: structure of the human beta-myosin s2 fragment 12 c2b9cA_ 94.5 9 PDB header:contractile protein Chain: A: PDB Molecule:striated-muscle alpha tropomyosin; PDBTitle: structure of tropomyosin's mid-region: bending and binding2 sites for actin 13 c1bg1A_ 94.5 13 PDB header:transcription/dna Chain: A: PDB Molecule:protein (transcription factor stat3b); PDBTitle: transcription factor stat3b/dna complex 14 c3l9oA_ 94.2 8 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome 15 c3g67A_ 94.0 13 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima 16 c3na7A_ 93.7 10 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 17 c1bf5A_ 93.7 8 PDB header:gene regulation/dna Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: tyrosine phosphorylated stat-1/dna complex 18 c3ol1A_ 93.7 8 PDB header:structural protein Chain: A: PDB Molecule:vimentin; PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b 19 c3o0zD_ 93.7 11 PDB header:transferase Chain: D: PDB Molecule:rho-associated protein kinase 1; PDBTitle: crystal structure of a coiled-coil domain from human rock i 20 c3cwgA_ 93.5 11 PDB header:transcription Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: unphosphorylated mouse stat3 core fragment 21 c3ghgK_ not modelled 93.4 10 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 22 c4a55B_ not modelled 93.0 5 PDB header:transferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: crystal structure of p110alpha in complex with ish2 of p85alpha and2 the inhibitor pik-108 23 c2gl2B_ not modelled 92.7 13 PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada 24 c1deqO_ not modelled 92.2 12 PDB header: PDB COMPND: 25 c1qu7A_ not modelled 90.9 12 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor 26 c2y3aB_ not modelled 89.5 8 PDB header:transferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit beta; PDBTitle: crystal structure of p110beta in complex with icsh2 of p85beta and2 the drug gdc-0941 27 c1y4cA_ not modelled 89.1 13 PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp 28 c1ei3E_ not modelled 88.6 6 PDB header: PDB COMPND: 29 c2v66C_ not modelled 87.9 9 PDB header:structural protein Chain: C: PDB Molecule:nuclear distribution protein nude-like 1; PDBTitle: crystal structure of the coiled-coil domain of ndel1 (a.a.2 58 to 169)c 30 c2wpqA_ not modelled 86.8 8 PDB header:membrane protein Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment; PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion) 31 c1deqF_ not modelled 85.9 11 PDB header: PDB COMPND: 32 c2dq3A_ not modelled 83.9 16 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of aq_298 33 c1deqD_ not modelled 83.1 8 PDB header: PDB COMPND: 34 c2v1yB_ not modelled 80.9 8 PDB header:transferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: structure of a phosphoinositide 3-kinase alpha adaptor-2 binding domain (abd) in a complex with the ish2 domain3 from p85 alpha 35 c2v71A_ not modelled 80.2 13 PDB header:nuclear protein Chain: A: PDB Molecule:nuclear distribution protein nude-like 1; PDBTitle: coiled-coil region of nudel 36 c1hciB_ not modelled 80.0 8 PDB header:triple-helix coiled coil Chain: B: PDB Molecule:alpha-actinin 2; PDBTitle: crystal structure of the rod domain of alpha-actinin 37 c1ei3C_ not modelled 79.0 8 PDB header: PDB COMPND: 38 c3dtpA_ not modelled 78.9 10 PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map 39 c3u1aC_ not modelled 77.0 6 PDB header:contractile protein Chain: C: PDB Molecule:smooth muscle tropomyosin alpha; PDBTitle: n-terminal 81-aa fragment of smooth muscle tropomyosin alpha 40 c2e7sM_ not modelled 75.8 14 PDB header:endocytosis/exocytosis Chain: M: PDB Molecule:rab guanine nucleotide exchange factor sec2; PDBTitle: crystal structure of the yeast sec2p gef domain 41 c3ojaA_ not modelled 73.8 10 PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex 42 c1jchC_ not modelled 73.6 9 PDB header:ribosome inhibitor, hydrolase Chain: C: PDB Molecule:colicin e3; PDBTitle: crystal structure of colicin e3 in complex with its immunity protein 43 c3hnwB_ not modelled 72.6 7 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750 44 c2i1jA_ not modelled 69.9 9 PDB header:cell adhesion, membrane protein Chain: A: PDB Molecule:moesin; PDBTitle: moesin from spodoptera frugiperda at 2.1 angstroms resolution 45 c1l8dB_ not modelled 69.4 13 PDB header:replication Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: rad50 coiled-coil zn hook 46 c3a7pB_ not modelled 69.4 15 PDB header:protein transport Chain: B: PDB Molecule:autophagy protein 16; PDBTitle: the crystal structure of saccharomyces cerevisiae atg16 47 c2qihA_ not modelled 66.3 13 PDB header:cell adhesion Chain: A: PDB Molecule:protein uspa1; PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from2 moraxella catarrhalis 48 c3hizB_ not modelled 64.6 8 PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha 49 c3iv1F_ not modelled 56.7 11 PDB header:hydrolase Chain: F: PDB Molecule:tumor susceptibility gene 101 protein; PDBTitle: coiled-coil domain of tumor susceptibility gene 101 50 c3r6nA_ not modelled 56.2 7 PDB header:cell adhesion Chain: A: PDB Molecule:desmoplakin; PDBTitle: crystal structure of a rigid four spectrin repeat fragment of the2 human desmoplakin plakin domain 51 c2rd0B_ not modelled 53.3 9 PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: structure of a human p110alpha/p85alpha complex 52 c3qh9A_ not modelled 49.8 16 PDB header:structural protein Chain: A: PDB Molecule:liprin-beta-2; PDBTitle: human liprin-beta2 coiled-coil 53 c2eqbC_ not modelled 43.9 12 PDB header:endocytosis/exocytosis Chain: C: PDB Molecule:rab guanine nucleotide exchange factor sec2; PDBTitle: crystal structure of the rab gtpase sec4p, the sec2p gef2 domain, and phosphate complex 54 c3layF_ not modelled 42.0 14 PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 55 c2jeeA_ not modelled 38.6 12 PDB header:cell cycle Chain: A: PDB Molecule:yiiu; PDBTitle: xray structure of e. coli yiiu 56 c1ic2B_ not modelled 34.7 9 PDB header:contractile protein Chain: B: PDB Molecule:tropomyosin alpha chain, skeletal muscle; PDBTitle: deciphering the design of the tropomyosin molecule 57 c2v4hA_ not modelled 32.9 18 PDB header:transcription Chain: A: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: nemo cc2-lz domain - 1d5 darpin complex 58 c2xdjF_ not modelled 32.8 10 PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf 59 c3ipkA_ not modelled 30.1 11 PDB header:cell adhesion Chain: A: PDB Molecule:agi/ii; PDBTitle: crystal structure of a3vp1 of agi/ii of streptococcus mutans 60 c1sjjB_ not modelled 29.7 10 PDB header:contractile protein Chain: B: PDB Molecule:actinin; PDBTitle: cryo-em structure of chicken gizzard smooth muscle alpha-2 actinin 61 c2no2A_ not modelled 29.4 10 PDB header:cell adhesion Chain: A: PDB Molecule:huntingtin-interacting protein 1; PDBTitle: crystal structure of the dllrkn-containing coiled-coil2 domain of huntingtin-interacting protein 1 62 d1seta1 not modelled 28.2 11 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Seryl-tRNA synthetase (SerRS) 63 c3m9bK_ not modelled 24.8 5 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 64 c3n4xB_ not modelled 22.4 8 PDB header:replication Chain: B: PDB Molecule:monopolin complex subunit csm1; PDBTitle: structure of csm1 full-length 65 c1ci6A_ not modelled 22.0 14 PDB header:transcription Chain: A: PDB Molecule:transcription factor atf-4; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 66 c3qo8A_ not modelled 21.7 14 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase, cytoplasmic; PDBTitle: crystal structure of seryl-trna synthetase from candida albicans 67 c1gd2G_ not modelled 21.3 10 PDB header:transcription/dna Chain: G: PDB Molecule:transcription factor pap1; PDBTitle: crystal structure of bzip transcription factor pap1 bound2 to dna 68 c1gk4A_ not modelled 20.4 8 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2) 69 c3q0xA_ not modelled 18.8 13 PDB header:structural protein Chain: A: PDB Molecule:centriole protein; PDBTitle: n-terminal coiled-coil dimer domain of c. reinhardtii sas-6 homolog2 bld12p 70 d2ap3a1 not modelled 17.9 7 Fold:Four-helical up-and-down bundle Superfamily:MW0975(SA0943)-like Family:MW0975(SA0943)-like 71 c1x8yA_ not modelled 17.6 11 PDB header:structural protein Chain: A: PDB Molecule:lamin a/c; PDBTitle: human lamin coil 2b 72 c2wt7B_ not modelled 16.7 14 PDB header:transcription Chain: B: PDB Molecule:transcription factor mafb; PDBTitle: crystal structure of the bzip heterodimeric complex2 mafb:cfos bound to dna 73 c1wt6B_ not modelled 16.5 20 PDB header:transferase Chain: B: PDB Molecule:myotonin-protein kinase; PDBTitle: coiled-coil domain of dmpk 74 c2zvnF_ not modelled 15.8 17 PDB header:signaling protein/transcription Chain: F: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: nemo cozi domain incomplex with diubiquitin in p2121212 space group 75 c2x7aB_ not modelled 15.5 5 PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain 76 c2bsgA_ not modelled 15.5 9 PDB header:viral protein Chain: A: PDB Molecule:fibritin; PDBTitle: the modeled structure of fibritin (gpwac) of bacteriophage2 t4 based on cryo-em reconstruction of the extended tail of3 bacteriophage t4 77 c2pmsD_ not modelled 15.5 11 PDB header:metal transport, hydrolase Chain: D: PDB Molecule:pneumococcal surface protein a (pspa); PDBTitle: crystal structure of the complex of human lactoferrin n-lobe and2 lactoferrin-binding domain of pneumococcal surface protein a 78 c1fosF_ not modelled 15.4 10 PDB header:transcription/dna Chain: F: PDB Molecule:c-jun proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 79 c2ke4A_ not modelled 15.4 12 PDB header:membrane protein Chain: A: PDB Molecule:cdc42-interacting protein 4; PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4 80 c3batB_ not modelled 15.2 14 PDB header:contractile protein Chain: B: PDB Molecule:myosin heavy chain, striated muscle/general PDBTitle: crystal structure of the n-terminal region of the scallop2 myosin rod, monoclinic (p21) form 81 c3cvfA_ not modelled 14.8 18 PDB header:signaling protein Chain: A: PDB Molecule:homer protein homolog 3; PDBTitle: crystal structure of the carboxy terminus of homer3 82 c1n73C_ not modelled 14.6 6 PDB header:blood clotting Chain: C: PDB Molecule:fibrin gamma chain; PDBTitle: fibrin d-dimer, lamprey complexed with the peptide ligand: gly-his-2 arg-pro-amide 83 c2hpcF_ not modelled 13.3 9 PDB header:blood clotting Chain: F: PDB Molecule:fibrinogen, gamma polypeptide; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 84 c1t2kD_ not modelled 11.4 10 PDB header:transcription/dna Chain: D: PDB Molecule:cyclic-amp-dependent transcription factor atf-2; PDBTitle: structure of the dna binding domains of irf3, atf-2 and jun2 bound to dna 85 c2p22C_ not modelled 11.2 15 PDB header:transport protein Chain: C: PDB Molecule:protein srn2; PDBTitle: structure of the yeast escrt-i heterotetramer core 86 c1g8xB_ not modelled 10.9 8 PDB header:structural protein Chain: B: PDB Molecule:myosin ii heavy chain fused to alpha-actinin 3; PDBTitle: structure of a genetically engineered molecular motor 87 c3cveC_ not modelled 10.7 17 PDB header:signaling protein Chain: C: PDB Molecule:homer protein homolog 1; PDBTitle: crystal structure of the carboxy terminus of homer1 88 c1yv0I_ not modelled 10.4 8 PDB header:contractile protein Chain: I: PDB Molecule:troponin i, fast skeletal muscle; PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-2 free state 89 c1junB_ not modelled 10.4 11 PDB header:transcription regulation Chain: B: PDB Molecule:c-jun homodimer; PDBTitle: nmr study of c-jun homodimer 90 c3mkxC_ not modelled 9.9 13 PDB header:antiviral protein Chain: C: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: crystal structure of bst2/tetherin 91 c3m06F_ not modelled 9.6 10 PDB header:protein binding Chain: F: PDB Molecule:tnf receptor-associated factor 2; PDBTitle: crystal structure of traf2 92 c1fosE_ not modelled 9.2 13 PDB header:transcription/dna Chain: E: PDB Molecule:p55-c-fos proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 93 c1u4qB_ not modelled 9.1 12 PDB header:structural protein Chain: B: PDB Molecule:spectrin alpha chain, brain; PDBTitle: crystal structure of repeats 15, 16 and 17 of chicken brain2 alpha spectrin 94 c1ru7B_ not modelled 9.0 15 PDB header:viral protein Chain: B: PDB Molecule:hemagglutinin; PDBTitle: 1934 human h1 hemagglutinin 95 c2xgjA_ not modelled 8.8 18 PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance 96 c2e43A_ not modelled 8.7 11 PDB header:transcription/dna Chain: A: PDB Molecule:ccaat/enhancer-binding protein beta; PDBTitle: crystal structure of c/ebpbeta bzip homodimer k269a mutant2 bound to a high affinity dna fragment 97 c3lssA_ not modelled 8.6 9 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: trypanosoma brucei seryl-trna synthetase in complex with atp 98 c1ik9B_ not modelled 8.0 8 PDB header:gene regulation/ligase Chain: B: PDB Molecule:dna repair protein xrcc4; PDBTitle: crystal structure of a xrcc4-dna ligase iv complex 99 c2w6aB_ not modelled 7.9 11 PDB header:signaling protein Chain: B: PDB Molecule:arf gtpase-activating protein git1; PDBTitle: x-ray structure of the dimeric git1 coiled-coil domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0