Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2oevA_

Fold library idPDB HeaderMoleculeTitle
c2oevA_PDB header: protein transportChain: A: PDB Molecule: programmed cell death 6-interacting protein;PDBTitle: crystal structure of alix/aip1


Added to library: Tue Mar 16 13:52:47 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGALETLLRY
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)









B



SS


SSSGGGTTTTTSS


SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence YDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLD
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) TTGGGS
SS
SS




SSSSS

SSS
SS
S
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence NDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDA
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) STTSSS


STTSTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence IIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQYYFGEEIARLQHAA
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP) TTTT




TTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence ELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKF
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP) STTT


TT





GGGS














S

SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence TDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKS
Predicted secondary structure

SS confidence





































































Known secondary structure (DSSP)

TTTTS

TTTTTTTS
SSTTS

 .........430.........440.........450.........460.........470.........480.........490
Sequence RSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAE
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TTTTTTSSSS

S

SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence GTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDE
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TTTS
S





SS
SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence VKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQV
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)




SSS

T
 .........640.........650.........660.........670.........680.........690.......
Sequence SHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFAR
Predicted secondary structure

SS confidence


































































Known secondary structure (DSSP) S

SS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D