PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2v1yB_

Fold library id	PDB Header	Molecule	Title
c2v1yB_	PDB header: transferase	Chain: B: PDB Molecule: phosphatidylinositol 3-kinase regulatory subunit	PDBTitle: structure of a phosphoinositide 3-kinase alpha adaptor-2 binding domain (abd) in a complex with the ish2 domain3 from p85 alpha

Links to external resources
Added to library: Tue Mar 16 12:02:14 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y Q Q D Q V V K E D N I E A V G K K L H K Y N T Q F Q E K S R E Y D R L Y E E Y T R T S Q E I Q X K R T A I E A F N E T I K I F E E Q C Q T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q E R Y S K E Y I E K F K R E G N E K E I Q R I X H N Y D K L K S R I S E I I D S R R R L E E D L K K Q A A E Y R E I D K R X N S I K P D L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170

Sequence I Q L R K T R D Q Y L X W L T Q K G V R Q K K L N E W L G N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	Q	Q	D	Q	V	V	K	E	D	N	I	E	A	V	G	K	K	L	H	K	Y	N	T	Q	F	Q	E	K	S	R	E	Y	D	R	L	Y	E	E	Y	T	R	T	S	Q	E	I	Q	X	K	R	T	A	I	E	A	F	N	E	T	I	K	I	F	E	E	Q	C	Q	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S			S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	E	R	Y	S	K	E	Y	I	E	K	F	K	R	E	G	N	E	K	E	I	Q	R	I	X	H	N	Y	D	K	L	K	S	R	I	S	E	I	I	D	S	R	R	R	L	E	E	D	L	K	K	Q	A	A	E	Y	R	E	I	D	K	R	X	N	S	I	K	P	D	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Sequence	I	Q	L	R	K	T	R	D	Q	Y	L	X	W	L	T	Q	K	G	V	R	Q	K	K	L	N	E	W	L	G	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T