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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2oexB_

Fold library idPDB HeaderMoleculeTitle
c2oexB_PDB header: protein transportChain: B: PDB Molecule: programmed cell death 6-interacting protein;PDBTitle: structure of alix/aip1 v domain


Added to library: Tue Mar 16 13:16:16 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SVQQSLAAYNQRKADLVNRSIAQXREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQ
Predicted secondary structure



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Known secondary structure (DSSP)
TTTTGGGG

STTS

TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence TVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDK
Predicted secondary structure
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Known secondary structure (DSSP) SSTT

S

T
 .........150.........160.........170.........180.........190.........200.........210
Sequence AVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTXQGSEVVNVLKSLLSNLDEVKKEREGLEN
Predicted secondary structure
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Known secondary structure (DSSP) TTTS
TTS





TTTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence DLKSVNFDXTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKXKQ
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Known secondary structure (DSSP) T



SSS

TTTTS
 .........290.........300.........310.........320.........330.........340.
Sequence SNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTER
Predicted secondary structure

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Known secondary structure (DSSP)

T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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