Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	T	A	I	T	R	Q	I	V	L	D	T	E	T	T	G	M	N	Q	I	G	A	H	Y	E	G	H	K	I	I	E	I	G	A	V	E	V	V	N	R	R	L	T	G	N	N	F	H	V	Y	L	K	P	D	R	L	V	D	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?																	?	?	?	?	?																															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	A	F	G	V	H	G	I	A	D	E	F	L	L	D	K	P	T	F	A	E	V	A	D	E	F	M	D	Y	I	R	G	A	E	L	V	I	H	N	A	A	F	D	I	G	F	M	D	Y	E	F	S	L	L	K	R	D	I	P	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	N	T	F	C	K	V	T	D	S	L	A	V	A	R	K	M	F	P	G	K	R	N	S	L	D	A	L	C	A	R	Y	E	I	D	N	S	K	R	T	L	H	G	A	L	L	D	A	Q	I	L	A	E	V	Y	L	A	M	T	G
Secondary structure
SS confidence
Disorder																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	Q	T	S	M	A	F	A	M	E	G	E	T	Q	Q	Q	Q	G	E	A	T	I	Q	R	I	V	R	Q	A	S	K	L	R	V	V	F	A	T	D	E	E	I	A	A	H	E	A	R	L	D	L	V	Q	K	K	G	G	S	C	L
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?					?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?																			?			?	?	?	?
Disorder confidence
		.	.	.
Sequence		W	R	A
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2gui chain A domain 1 Region: 7 - 180 Aligned: 174 Modelled: 174 Confidence: 100.0% Identity: 100% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: DnaQ-like 3'-5' exonuclease Phyre2 PDB 1zbh chain A Region: 2 - 216 Aligned: 211 Modelled: 215 Confidence: 100.0% Identity: 17% PDB header:hydrolase/rna Chain: A: PDB Molecule:3'-5' exonuclease eri1; PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease Phyre2 PDB 3cm6 chain A Region: 4 - 179 Aligned: 171 Modelled: 176 Confidence: 100.0% Identity: 19% PDB header:hydrolase, apoptosis Chain: A: PDB Molecule:cell death-related nuclease 4; PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er Phyre2 PDB 1zbu chain B Region: 2 - 187 Aligned: 182 Modelled: 186 Confidence: 100.0% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:3'-5' exonuclease eri1; PDBTitle: crystal structure of full-length 3'-exonuclease Phyre2 PDB 1y97 chain A domain 1 Region: 2 - 179 Aligned: 166 Modelled: 178 Confidence: 100.0% Identity: 23% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: DnaQ-like 3'-5' exonuclease Phyre2 PDB 2f96 chain A domain 1 Region: 6 - 188 Aligned: 175 Modelled: 183 Confidence: 100.0% Identity: 22% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: DnaQ-like 3'-5' exonuclease Phyre2 PDB 2p1j chain B Region: 8 - 186 Aligned: 167 Modelled: 174 Confidence: 100.0% Identity: 29% PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii polc-type; PDBTitle: crystal structure of a polc-type dna polymerase iii2 exonuclease domain from thermotoga maritima Phyre2 PDB 2xri chain A Region: 1 - 191 Aligned: 184 Modelled: 191 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:eri1 exoribonuclease 3; PDBTitle: crystal structure of human eri1 exoribonuclease 3 Phyre2 PDB 2qxf chain A domain 1 Region: 6 - 203 Aligned: 188 Modelled: 198 Confidence: 100.0% Identity: 17% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: DnaQ-like 3'-5' exonuclease Phyre2 PDB 3u6f chain A Region: 3 - 179 Aligned: 168 Modelled: 177 Confidence: 100.0% Identity: 24% PDB header:hydrolase/dna Chain: A: PDB Molecule:three prime repair exonuclease 1; PDBTitle: mouse trex1 d200n mutant Phyre2 PDB 1w0h chain A Region: 5 - 185 Aligned: 177 Modelled: 181 Confidence: 100.0% Identity: 18% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: DnaQ-like 3'-5' exonuclease Phyre2 PDB 3b6o chain A domain 1 Region: 3 - 178 Aligned: 167 Modelled: 176 Confidence: 100.0% Identity: 20% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: DnaQ-like 3'-5' exonuclease Phyre2 PDB 2is3 chain B Region: 5 - 192 Aligned: 163 Modelled: 181 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: B: PDB Molecule:ribonuclease t; PDBTitle: crystal structure of escherichia coli rnase t Phyre2 PDB 1j9a chain A Region: 1 - 185 Aligned: 167 Modelled: 181 Confidence: 100.0% Identity: 17% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: DnaQ-like 3'-5' exonuclease Phyre2 PDB 1wlj chain A Region: 7 - 178 Aligned: 152 Modelled: 168 Confidence: 100.0% Identity: 20% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: DnaQ-like 3'-5' exonuclease Phyre2 PDB 3tr8 chain A Region: 1 - 178 Aligned: 157 Modelled: 176 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:oligoribonuclease; PDBTitle: structure of an oligoribonuclease (orn) from coxiella burnetii Phyre2 PDB 2igi chain A domain 1 Region: 2 - 185 Aligned: 166 Modelled: 184 Confidence: 100.0% Identity: 13% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: DnaQ-like 3'-5' exonuclease Phyre2 PDB 2gbz chain A Region: 6 - 187 Aligned: 164 Modelled: 182 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:oligoribonuclease; PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix Phyre2 PDB 1uoc chain A Region: 7 - 180 Aligned: 168 Modelled: 174 Confidence: 99.8% Identity: 14% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: CAF1-like ribonuclease Phyre2 PDB 2d5r chain A domain 1 Region: 7 - 180 Aligned: 172 Modelled: 174 Confidence: 99.7% Identity: 14% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: CAF1-like ribonuclease Phyre2 1 d2guia1 2 c1zbhA_ 3 c3cm6A_ 4 c1zbuB_ 5 d1y97a1 6 d2f96a1 7 c2p1jB_ 8 c2xriA_ 9 d2qxfa1 10 c3u6fA_ 11 d1w0ha_ 12 d3b6oa1 13 c2is3B_ 14 d1j9aa_ 15 d1wlja_ 16 c3tr8A_ 17 d2igia1 18 c2gbzA_ 19 d1uoca_ 20 d2d5ra1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2guia1 100.0 100 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 2 c1zbhA_ 100.0 17 PDB header:hydrolase/rna Chain: A: PDB Molecule:3'-5' exonuclease eri1; PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease 3 c3cm6A_ 100.0 19 PDB header:hydrolase, apoptosis Chain: A: PDB Molecule:cell death-related nuclease 4; PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er 4 c1zbuB_ 100.0 18 PDB header:hydrolase Chain: B: PDB Molecule:3'-5' exonuclease eri1; PDBTitle: crystal structure of full-length 3'-exonuclease 5 d1y97a1 100.0 23 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 6 d2f96a1 100.0 22 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 7 c2p1jB_ 100.0 29 PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii polc-type; PDBTitle: crystal structure of a polc-type dna polymerase iii2 exonuclease domain from thermotoga maritima 8 c2xriA_ 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:eri1 exoribonuclease 3; PDBTitle: crystal structure of human eri1 exoribonuclease 3 9 d2qxfa1 100.0 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 10 c3u6fA_ 100.0 24 PDB header:hydrolase/dna Chain: A: PDB Molecule:three prime repair exonuclease 1; PDBTitle: mouse trex1 d200n mutant 11 d1w0ha_ 100.0 18 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 12 d3b6oa1 100.0 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 13 c2is3B_ 100.0 21 PDB header:hydrolase Chain: B: PDB Molecule:ribonuclease t; PDBTitle: crystal structure of escherichia coli rnase t 14 d1j9aa_ 100.0 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 15 d1wlja_ 100.0 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 16 c3tr8A_ 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:oligoribonuclease; PDBTitle: structure of an oligoribonuclease (orn) from coxiella burnetii 17 d2igia1 100.0 13 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 18 c2gbzA_ 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:oligoribonuclease; PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix 19 d1uoca_ 99.8 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:CAF1-like ribonuclease 20 d2d5ra1 99.7 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:CAF1-like ribonuclease 21 c2p51A_ not modelled 99.7 16 PDB header:hydrolase, gene regulation Chain: A: PDB Molecule:spcc18.06c protein; PDBTitle: crystal structure of the s. pombe pop2p deadenylation2 subunit 22 d1x9ma1 not modelled 99.5 18 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 23 d1kfsa1 not modelled 99.5 19 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 24 c2kzzA_ not modelled 99.5 19 PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase i); PDBTitle: klenow fragment with normal substrate and zinc only 25 c1tk0A_ not modelled 99.3 23 PDB header:transferase/electron transport/dna Chain: A: PDB Molecule:dna polymerase; PDBTitle: t7 dna polymerase ternary complex with 8 oxo guanosine and2 ddctp at the insertion site 26 c1njzA_ not modelled 99.3 17 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase i; PDBTitle: cytosine-thymine mismatch at the polymerase active site 27 c3d45B_ not modelled 99.3 22 PDB header:hydrolase Chain: B: PDB Molecule:poly(a)-specific ribonuclease parn; PDBTitle: crystal structure of mouse parn in complex with m7gpppg 28 c2gv9B_ not modelled 99.2 13 PDB header:transferase Chain: B: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase 29 c2a1sC_ not modelled 99.2 25 PDB header:hydrolase Chain: C: PDB Molecule:poly(a)-specific ribonuclease parn; PDBTitle: crystal structure of native parn nuclease domain 30 c3iayA_ not modelled 99.1 17 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase delta catalytic subunit; PDBTitle: ternary complex of dna polymerase delta 31 d1qhta1 not modelled 99.1 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 32 d1tgoa1 not modelled 99.1 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 33 d1d5aa1 not modelled 99.0 19 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 34 d2hhva1 not modelled 99.0 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 35 d1wn7a1 not modelled 99.0 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 36 c4ktqA_ not modelled 98.8 14 PDB header:transferase/dna Chain: A: PDB Molecule:protein (large fragment of dna polymerase i); PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna 37 c1d5aA_ not modelled 98.7 17 PDB header:transferase Chain: A: PDB Molecule:protein (dna polymerase); PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom 38 c2vwkA_ not modelled 98.7 16 PDB header:dna replication Chain: A: PDB Molecule:dna polymerase; PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant 39 d1q8ia1 not modelled 98.7 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 40 d1ih7a1 not modelled 98.6 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 41 d1s5ja1 not modelled 98.6 13 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 42 d1noya_ not modelled 98.5 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 43 c1yt3A_ not modelled 98.5 18 PDB header:hydrolase,translation Chain: A: PDB Molecule:ribonuclease d; PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing 44 d1yt3a3 not modelled 98.4 18 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 45 c2dtuA_ not modelled 98.4 18 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the beta hairpin loop deletion variant2 of rb69 gp43 in complex with dna containing an abasic site3 analog 46 c1q8iA_ not modelled 98.4 15 PDB header:transferase Chain: A: PDB Molecule:dna polymerase ii; PDBTitle: crystal structure of escherichia coli dna polymerase ii 47 c2e6mA_ not modelled 98.2 12 PDB header:hydrolase Chain: A: PDB Molecule:werner syndrome atp-dependent helicase homolog; PDBTitle: structure of mouse werner exonuclease domain 48 c3cymA_ not modelled 98.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bad_0989; PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis 49 c1s5jA_ not modelled 98.1 17 PDB header:transferase Chain: A: PDB Molecule:dna polymerase i; PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus 50 d2hbka2 not modelled 97.7 24 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 51 c2hbkA_ not modelled 97.5 23 PDB header:hydrolase, gene regulation Chain: A: PDB Molecule:exosome complex exonuclease rrp6; PDBTitle: structure of the yeast nuclear exosome component, rrp6p,2 reveals an interplay between the active site and the hrdc3 domain; protein in complex with mn 52 c3sahA_ not modelled 96.8 23 PDB header:hydrolase Chain: A: PDB Molecule:exosome component 10; PDBTitle: crystal structure of the human rrp6 catalytic domain with y436a2 mutation in the catalytic site 53 c1cmwA_ not modelled 96.8 16 PDB header:transferase Chain: A: PDB Molecule:protein (dna polymerase i); PDBTitle: crystal structure of taq dna-polymerase shows a new2 orientation for the structure-specific nuclease domain 54 d2py5a1 not modelled 96.4 24 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 55 c3ikmD_ not modelled 95.8 18 PDB header:transferase Chain: D: PDB Molecule:dna polymerase subunit gamma-1; PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme 56 d1vk0a_ not modelled 95.7 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 57 c2ex3I_ not modelled 95.4 24 PDB header:transferase/replication Chain: I: PDB Molecule:dna polymerase; PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein 58 c3q7cA_ not modelled 54.5 17 PDB header:hydrolase Chain: A: PDB Molecule:nucleoprotein; PDBTitle: exonuclease domain of lassa virus nucleoprotein bound to manganese 59 c2x5eA_ not modelled 26.1 36 PDB header:unknown function Chain: A: PDB Molecule:upf0271 protein pa4511; PDBTitle: crystal structure of the hypothetical protein pa4511 from2 pseudomonas aeruginosa 60 d1xw8a_ not modelled 22.0 18 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 61 d1v6ta_ not modelled 18.1 23 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 62 c3mx2A_ not modelled 13.6 20 PDB header:nuclear protein Chain: A: PDB Molecule:nucleoprotein; PDBTitle: lassa fever virus nucleoprotein complexed with dttp 63 c2o8vA_ not modelled 13.6 13 PDB header:oxidoreductase Chain: A: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: paps reductase in a covalent complex with thioredoxin c35a 64 d1l6ra_ not modelled 10.8 20 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 65 d2nlva1 not modelled 10.6 16 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 66 d1wzca1 not modelled 10.3 42 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 67 d2nvma1 not modelled 10.0 14 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 68 d2rk5a1 not modelled 8.7 21 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 69 c3m1yA_ not modelled 8.5 23 PDB header:hydrolase Chain: A: PDB Molecule:phosphoserine phosphatase (serb); PDBTitle: crystal structure of a phosphoserine phosphatase (serb) from2 helicobacter pylori 70 d2nwva1 not modelled 8.2 19 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 71 c2d3wB_ not modelled 8.0 23 PDB header:biosynthetic protein Chain: B: PDB Molecule:probable atp-dependent transporter sufc; PDBTitle: crystal structure of escherichia coli sufc, an atpase2 compenent of the suf iron-sulfur cluster assembly machinery 72 d2dfaa1 not modelled 6.1 24 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 73 d1mjta_ not modelled 6.0 14 Fold:Nitric oxide (NO) synthase oxygenase domain Superfamily:Nitric oxide (NO) synthase oxygenase domain Family:Nitric oxide (NO) synthase oxygenase domain 74 c3d7qB_ not modelled 5.8 17 PDB header:unknown function Chain: B: PDB Molecule:xisi protein-like; PDBTitle: crystal structure of a xisi-like protein (npun_ar114) from nostoc2 punctiforme pcc 73102 at 2.30 a resolution 75 c3qodB_ not modelled 5.3 62 PDB header:dna binding protein Chain: B: PDB Molecule:heterocyst differentiation protein; PDBTitle: crystal structure of heterocyst differentiation protein, hetr from2 fischerella mv11 76 d2g3ra2 not modelled 5.2 26 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0