Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP22523
DateWed Jan 25 15:20:42 GMT 2012
Unique Job ID067380b0756e9b95

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3eukC_
Top template information
PDB header:cell cycle
Chain: C: PDB Molecule:chromosome partition protein mukb, linker;
PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, asymmetric dimer
Confidence and coverage
Confidence:100.0% Coverage: 16%
232 residues ( 16% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
1352 residues ( 91%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF
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?


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   .........70.........80.........90.........100.........110.........120
Sequence  RNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKP
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Disorder  ????????????????
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?
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   .........130.........140.........150.........160.........170.........180
Sequence  FAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAMEGVQFKQFNSITDYHSLMFD
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??
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   .........190.........200.........210.........220.........230.........240
Sequence  LGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR
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   .........250.........260.........270.........280.........290.........300
Sequence  ENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMRHANERRVHLDKALEFRRELHTSRQ
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   .........310.........320.........330.........340.........350.........360
Sequence  QLAAEQYKHVDMARELAEHNGAEGDLEADYQAASDHLNLVQTALRQQEKIERYEADLDEL
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   .........370.........380.........390.........400.........410.........420
Sequence  QIRLEEQNEVVAEAIERQQENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYNQAI
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   .........430.........440.........450.........460.........470.........480
Sequence  AALNRAKELCHLPDLTADCAAEWLETFQAKELEATEKMLSLEQKMSMAQTAHSQFEQAYQ
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   .........490.........500.........510.........520.........530.........540
Sequence  LVVAINGPLARNEAWDVARELLREGVDQRHLAEQVQPLRMRLSELEQRLREQQEAERLLA
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   .........550.........560.........570.........580.........590.........600
Sequence  DFCKRQGKNFDIDELEALHQELEARIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQR
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   .........610.........620.........630.........640.........650.........660
Sequence  APVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEI
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   .........670.........680.........690.........700.........710.........720
Sequence  ERLSQPGGSEDQRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQV
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   .........730.........740.........750.........760.........770.........780
Sequence  TEHLEGLTDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGR
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   .........790.........800.........810.........820.........830.........840
Sequence  AARESRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSRFIGSHLAVAFESDPEAEIRQ
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   .........850.........860.........870.........880.........890.........900
Sequence  LNSRRVELERALSNHENDNQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRE
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   .........910.........920.........930.........940.........950.........960
Sequence  RLDEAQEAARFVQQFGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFAL
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  TEVVQRRAHFSYSDSAEMLSGNSDLNEKLRERLEQAEAERTRAREALRGHAAQLSQYNQV
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  LASLKSSYDTKKELLNDLQRELQDIGVRADSGAEERARIRRDELHAQLSNNRSRRNQLEK
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  ALTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAY
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  LSADDLRSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAVYQHLRERIRQ
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  DIIRTDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRMLNQ
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   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  GLQNVSFGQVNSVRLNVNVRETHAMLLDVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLN
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   .........1330.........1340.........1350.........1360.........1370.........1380
Sequence  PQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSILVM
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   .........1390.........1400.........1410.........1420.........1430.........1440
Sequence  VVQSWEDESRRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPENISP
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   .........1450.........1460.........1470.........1480......
Sequence  EKGTTYKLVRKVFQNTEHVHVVGLRGFAPQLPETLPGTDEAPSQAS
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3euk chain C

3D model

Region: 1222 - 1467
Aligned: 232
Modelled: 246
Confidence: 100.0%
Identity: 72%
PDB header:cell cycle
Chain: C: PDB Molecule:chromosome partition protein mukb, linker;
PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, asymmetric dimer

Phyre2

PDB 1qhl chain A

3D model

Region: 4 - 224
Aligned: 203
Modelled: 203
Confidence: 99.7%
Identity: 99%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 3qg5 chain A

3D model

Region: 5 - 399
Aligned: 340
Modelled: 339
Confidence: 99.6%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:rad50;
PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair

Phyre2

PDB 1xex chain A

3D model

Region: 7 - 161
Aligned: 155
Modelled: 155
Confidence: 99.5%
Identity: 14%
PDB header:cell cycle
Chain: A: PDB Molecule:smc protein;
PDBTitle: structural biochemistry of atp-driven dimerization and dna2 stimulated activation of smc atpases.

Phyre2

PDB 3qku chain B

3D model

Region: 6 - 178
Aligned: 173
Modelled: 173
Confidence: 99.5%
Identity: 11%
PDB header:replication
Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase;
PDBTitle: mre11 rad50 binding domain in complex with rad50 and amp-pnp

Phyre2

PDB 3auy chain B

3D model

Region: 6 - 192
Aligned: 183
Modelled: 187
Confidence: 99.5%
Identity: 11%
PDB header:recombination
Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase;
PDBTitle: crystal structure of rad50 bound to adp

Phyre2

PDB 1ii8 chain A

3D model

Region: 6 - 194
Aligned: 189
Modelled: 189
Confidence: 99.4%
Identity: 10%
PDB header:replication
Chain: A: PDB Molecule:rad50 abc-atpase;
PDBTitle: crystal structure of the p. furiosus rad50 atpase domain

Phyre2

PDB 1w1w chain A

3D model

Region: 5 - 178
Aligned: 152
Modelled: 152
Confidence: 99.4%
Identity: 15%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 1e69 chain A

3D model

Region: 6 - 142
Aligned: 121
Modelled: 122
Confidence: 99.4%
Identity: 17%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 2o5v chain A

3D model

Region: 6 - 103
Aligned: 94
Modelled: 98
Confidence: 99.2%
Identity: 23%
PDB header:replication/recombination
Chain: A: PDB Molecule:dna replication and repair protein recf;
PDBTitle: recombination mediator recf

Phyre2

PDB 1us8 chain A

3D model

Region: 6 - 57
Aligned: 52
Modelled: 52
Confidence: 99.2%
Identity: 25%
PDB header:dna repair
Chain: A: PDB Molecule:dna double-strand break repair rad50 atpase;
PDBTitle: the rad50 signature motif: essential to atp binding and2 biological function

Phyre2

PDB 1ii8 chain B

3D model

Region: 1280 - 1461
Aligned: 169
Modelled: 182
Confidence: 98.5%
Identity: 17%
PDB header:replication
Chain: B: PDB Molecule:rad50 abc-atpase;
PDBTitle: crystal structure of the p. furiosus rad50 atpase domain

Phyre2

PDB 1xex chain B

3D model

Region: 1309 - 1480
Aligned: 155
Modelled: 172
Confidence: 98.4%
Identity: 15%
PDB header:cell cycle
Chain: B: PDB Molecule:smc protein;
PDBTitle: structural biochemistry of atp-driven dimerization and dna2 stimulated activation of smc atpases.

Phyre2

PDB 3ibp chain A

3D model

Region: 573 - 853
Aligned: 281
Modelled: 281
Confidence: 98.2%
Identity: 99%
PDB header:cell cycle
Chain: A: PDB Molecule:chromosome partition protein mukb;
PDBTitle: the crystal structure of the dimerization domain of escherichia coli2 structural maintenance of chromosomes protein mukb

Phyre2

PDB 1v43 chain A domain 3

3D model

Region: 6 - 48
Aligned: 43
Modelled: 43
Confidence: 97.9%
Identity: 28%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 1z47 chain B

3D model

Region: 9 - 64
Aligned: 56
Modelled: 56
Confidence: 97.9%
Identity: 16%
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative abc-transporter atp-binding protein;
PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius

Phyre2

PDB 1vci chain A

3D model

Region: 6 - 64
Aligned: 59
Modelled: 59
Confidence: 97.9%
Identity: 24%
PDB header:transport protein
Chain: A: PDB Molecule:sugar-binding transport atp-binding protein;
PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp

Phyre2

PDB 2awn chain A domain 2

3D model

Region: 6 - 48
Aligned: 43
Modelled: 43
Confidence: 97.8%
Identity: 21%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 1g29 chain 1 domain 2

3D model

Region: 7 - 48
Aligned: 42
Modelled: 42
Confidence: 97.8%
Identity: 26%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 2it1 chain B

3D model

Region: 10 - 64
Aligned: 55
Modelled: 55
Confidence: 97.8%
Identity: 24%
PDB header:transport protein
Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin
PDBTitle: structure of ph0203 protein from pyrococcus horikoshii

Phyre2

PDB 1c1g chain A

3D model

Region: 838 - 1126
Aligned: 283
Modelled: 283
Confidence: 97.2%
Identity: 11%
PDB header:contractile protein
Chain: A: PDB Molecule:tropomyosin;
PDBTitle: crystal structure of tropomyosin at 7 angstroms resolution2 in the spermine-induced crystal form

Phyre2

PDB 1f5n chain A

3D model

Region: 28 - 499
Aligned: 448
Modelled: 448
Confidence: 96.3%
Identity: 11%
PDB header:signaling protein
Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1;
PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp.

Phyre2

PDB 3oja chain B

3D model

Region: 963 - 1109
Aligned: 146
Modelled: 146
Confidence: 96.3%
Identity: 14%
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex

Phyre2

PDB 3ghg chain K

3D model

Region: 982 - 1096
Aligned: 115
Modelled: 115
Confidence: 96.1%
Identity: 11%
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen

Phyre2

PDB 1deq chain O

3D model

Region: 984 - 1096
Aligned: 113
Modelled: 113
Confidence: 96.0%
Identity: 12%
PDB header:
PDB COMPND:

Phyre2

PDB 1cii chain A

3D model

Region: 832 - 1386
Aligned: 503
Modelled: 503
Confidence: 95.9%
Identity: 14%
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia

Phyre2
1

c3eukC_
2

d1qhla_
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c3qg5A_
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c1xexA_
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c3qkuB_
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c3auyB_
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c1ii8A_
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d1w1wa_
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d1e69a_
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c2o5vA_
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c1us8A_
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c1ii8B_
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c1xexB_
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c3ibpA_
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d1v43a3
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c1z47B_
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c1vciA_
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d2awna2
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d1g2912
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c2it1B_
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c1c1gA_
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c1f5nA_
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c3ojaB_
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c3ghgK_
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c1deqO_
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c1ciiA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3eukC_



100.0 72 PDB header:cell cycle
Chain: C: PDB Molecule:chromosome partition protein mukb, linker;
PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, asymmetric dimer
2d1qhla_



99.7 99 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
3c3qg5A_



99.6 14 PDB header:hydrolase
Chain: A: PDB Molecule:rad50;
PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair
4c1xexA_



99.5 14 PDB header:cell cycle
Chain: A: PDB Molecule:smc protein;
PDBTitle: structural biochemistry of atp-driven dimerization and dna2 stimulated activation of smc atpases.
5c3qkuB_



99.5 11 PDB header:replication
Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase;
PDBTitle: mre11 rad50 binding domain in complex with rad50 and amp-pnp
6c3auyB_



99.5 11 PDB header:recombination
Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase;
PDBTitle: crystal structure of rad50 bound to adp
7c1ii8A_



99.4 10 PDB header:replication
Chain: A: PDB Molecule:rad50 abc-atpase;
PDBTitle: crystal structure of the p. furiosus rad50 atpase domain
8d1w1wa_



99.4 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
9d1e69a_



99.4 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
10c2o5vA_



99.2 23 PDB header:replication/recombination
Chain: A: PDB Molecule:dna replication and repair protein recf;
PDBTitle: recombination mediator recf
11c1us8A_



99.2 25 PDB header:dna repair
Chain: A: PDB Molecule:dna double-strand break repair rad50 atpase;
PDBTitle: the rad50 signature motif: essential to atp binding and2 biological function
12c1ii8B_



98.5 17 PDB header:replication
Chain: B: PDB Molecule:rad50 abc-atpase;
PDBTitle: crystal structure of the p. furiosus rad50 atpase domain
13c1xexB_



98.4 15 PDB header:cell cycle
Chain: B: PDB Molecule:smc protein;
PDBTitle: structural biochemistry of atp-driven dimerization and dna2 stimulated activation of smc atpases.
14c3ibpA_



98.2 99 PDB header:cell cycle
Chain: A: PDB Molecule:chromosome partition protein mukb;
PDBTitle: the crystal structure of the dimerization domain of escherichia coli2 structural maintenance of chromosomes protein mukb
15d1v43a3



97.9 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
16c1z47B_



97.9 16 PDB header:ligand binding protein
Chain: B: PDB Molecule:putative abc-transporter atp-binding protein;
PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius
17c1vciA_



97.9 24 PDB header:transport protein
Chain: A: PDB Molecule:sugar-binding transport atp-binding protein;
PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp
18d2awna2



97.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
19d1g2912



97.8 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
20c2it1B_



97.8 24 PDB header:transport protein
Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin
PDBTitle: structure of ph0203 protein from pyrococcus horikoshii
21c2yz2B_



not modelled 97.8 25 PDB header:hydrolase
Chain: B: PDB Molecule:putative abc transporter atp-binding protein tm_0222;
PDBTitle: crystal structure of the abc transporter in the cobalt transport2 system
22d2onka1



not modelled 97.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
23c1f2uD_



not modelled 97.8 20 PDB header:replication
Chain: D: PDB Molecule:rad50 abc-atpase;
PDBTitle: crystal structure of rad50 abc-atpase
24c3d31B_



not modelled 97.7 19 PDB header:transport protein
Chain: B: PDB Molecule:sulfate/molybdate abc transporter, atp-binding
PDBTitle: modbc from methanosarcina acetivorans
25c2ghiD_



not modelled 97.7 21 PDB header:transport protein
Chain: D: PDB Molecule:transport protein;
PDBTitle: crystal structure of plasmodium yoelii multidrug resistance2 protein 2
26c3gfoA_



not modelled 97.7 31 PDB header:atp binding protein
Chain: A: PDB Molecule:cobalt import atp-binding protein cbio 1;
PDBTitle: structure of cbio1 from clostridium perfringens: part of2 the abc transporter complex cbionq.
27c2nq2C_



not modelled 97.7 28 PDB header:metal transport
Chain: C: PDB Molecule:hypothetical abc transporter atp-binding protein
PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter.
28d1l7vc_



not modelled 97.6 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
29c2d62A_



not modelled 97.6 15 PDB header:sugar binding protein
Chain: A: PDB Molecule:multiple sugar-binding transport atp-binding
PDBTitle: crystal structure of multiple sugar binding transport atp-2 binding protein
30c3gd7C_



not modelled 97.6 29 PDB header:hydrolase
Chain: C: PDB Molecule:fusion complex of cystic fibrosis transmembrane
PDBTitle: crystal structure of human nbd2 complexed with n6-2 phenylethyl-atp (p-atp)
31c2ihyB_



not modelled 97.6 19 PDB header:hydrolase
Chain: B: PDB Molecule:abc transporter, atp-binding protein;
PDBTitle: structure of the staphylococcus aureus putative atpase subunit of an2 atp-binding cassette (abc) transporter
32d1sgwa_



not modelled 97.6 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
33c2yyzA_



not modelled 97.6 18 PDB header:transport protein
Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein;
PDBTitle: crystal structure of sugar abc transporter, atp-binding protein
34d3b60a1



not modelled 97.6 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
35c1oxtB_



not modelled 97.6 17 PDB header:transport protein
Chain: B: PDB Molecule:abc transporter, atp binding protein;
PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus
36d1g6ha_



not modelled 97.6 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
37c2d2fA_



not modelled 97.6 30 PDB header:protein binding
Chain: A: PDB Molecule:sufc protein;
PDBTitle: crystal structure of atypical cytoplasmic abc-atpase sufc from thermus2 thermophilus hb8
38d1b0ua_



not modelled 97.6 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
39c2pcjB_



not modelled 97.6 13 PDB header:hydrolase
Chain: B: PDB Molecule:lipoprotein-releasing system atp-binding protein lold;
PDBTitle: crystal structure of abc transporter (aq_297) from aquifex aeolicus2 vf5
40c2d3wB_



not modelled 97.6 26 PDB header:biosynthetic protein
Chain: B: PDB Molecule:probable atp-dependent transporter sufc;
PDBTitle: crystal structure of escherichia coli sufc, an atpase2 compenent of the suf iron-sulfur cluster assembly machinery
41d1ji0a_



not modelled 97.6 30 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
42d3d31a2



not modelled 97.5 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
43d3dhwc1



not modelled 97.5 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
44c3fvqB_



not modelled 97.5 21 PDB header:hydrolase
Chain: B: PDB Molecule:fe(3+) ions import atp-binding protein fbpc;
PDBTitle: crystal structure of the nucleotide binding domain fbpc2 complexed with atp
45d1xmia_



not modelled 97.5 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
46d1oxxk2



not modelled 97.5 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
47c2cbzA_



not modelled 97.5 26 PDB header:transport
Chain: A: PDB Molecule:multidrug resistance-associated protein 1;
PDBTitle: structure of the human multidrug resistance protein 12 nucleotide binding domain 1
48c1q1bD_



not modelled 97.5 16 PDB header:transport protein
Chain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk;
PDBTitle: crystal structure of e. coli malk in the nucleotide-free form
49c2olkD_



not modelled 97.5 20 PDB header:hydrolase
Chain: D: PDB Molecule:amino acid abc transporter;
PDBTitle: abc protein artp in complex with adp-beta-s
50d1vpla_



not modelled 97.5 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
51d1jj7a_



not modelled 97.5 35 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
52d1l2ta_



not modelled 97.5 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
53d2pmka1



not modelled 97.5 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
54c2pzfB_



not modelled 97.4 16 PDB header:hydrolase
Chain: B: PDB Molecule:cystic fibrosis transmembrane conductance regulator;
PDBTitle: minimal human cftr first nucleotide binding domain as a head-to-tail2 dimer with delta f508
55d1mv5a_



not modelled 97.4 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
56c3nhaA_



not modelled 97.4 23 PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette sub-family b member 6, mitochondrial;
PDBTitle: nucleotide binding domain of human abcb6 (adp mg bound structure)
57d1vmaa2



not modelled 97.4 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
58d1np6a_



not modelled 97.4 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
59d1r0wa_



not modelled 97.3 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
60d1okkd2



not modelled 97.3 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
61d2qy9a2



not modelled 97.3 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
62c1c1gA_



97.2 11 PDB header:contractile protein
Chain: A: PDB Molecule:tropomyosin;
PDBTitle: crystal structure of tropomyosin at 7 angstroms resolution2 in the spermine-induced crystal form
63c2vf7B_



not modelled 97.2 25 PDB header:dna-binding protein
Chain: B: PDB Molecule:excinuclease abc, subunit a.;
PDBTitle: crystal structure of uvra2 from deinococcus radiodurans
64c2j41A_



not modelled 97.2 36 PDB header:transferase
Chain: A: PDB Molecule:guanylate kinase;
PDBTitle: crystal structure of staphylococcus aureus guanylate2 monophosphate kinase
65d1ls1a2



not modelled 97.1 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
66c3tauB_



not modelled 97.1 41 PDB header:transferase
Chain: B: PDB Molecule:guanylate kinase;
PDBTitle: crystal structure of a putative guanylate monophosphaste kinase from2 listeria monocytogenes egd-e
67d1cr2a_



not modelled 97.0 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
68c2r6fA_



not modelled 97.0 28 PDB header:hydrolase
Chain: A: PDB Molecule:excinuclease abc subunit a;
PDBTitle: crystal structure of bacillus stearothermophilus uvra
69d1pf4a1



not modelled 97.0 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
70c3pihA_



not modelled 96.9 25 PDB header:hydrolase/dna
Chain: A: PDB Molecule:uvrabc system protein a;
PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
71c2ygrD_



not modelled 96.9 23 PDB header:hydrolase
Chain: D: PDB Molecule:uvrabc system protein a;
PDBTitle: mycobacterium tuberculosis uvra
72d1ewqa2



not modelled 96.9 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
73c2iw3B_



not modelled 96.9 25 PDB header:translation
Chain: B: PDB Molecule:elongation factor 3a;
PDBTitle: elongation factor 3 in complex with adp
74c1yqtA_



not modelled 96.9 24 PDB header:hydrolyase/translation
Chain: A: PDB Molecule:rnase l inhibitor;
PDBTitle: rnase-l inhibitor
75c2pjzA_



not modelled 96.8 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein st1066;
PDBTitle: the crystal structure of putative cobalt transport atp-2 binding protein (cbio-2), st1066
76c3bk7A_



not modelled 96.7 23 PDB header:hydrolyase/translation
Chain: A: PDB Molecule:abc transporter atp-binding protein;
PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii
77c3a4mB_



not modelled 96.7 17 PDB header:transferase
Chain: B: PDB Molecule:l-seryl-trna(sec) kinase;
PDBTitle: crystal structure of archaeal o-phosphoseryl-trna(sec)2 kinase
78d1qzxa3



not modelled 96.7 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
79c2yl4A_



not modelled 96.7 28 PDB header:membrane protein
Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10,
PDBTitle: structure of the human mitochondrial abc transporter, abcb10
80c3dhwC_



not modelled 96.6 25 PDB header:membrane protein/hydrolase
Chain: C: PDB Molecule:methionine import atp-binding protein metn;
PDBTitle: crystal structure of methionine importer metni
81c3ozxA_



not modelled 96.6 21 PDB header:hydrolase, translation
Chain: A: PDB Molecule:rnase l inhibitor;
PDBTitle: crystal structure of abce1 of sulfolubus solfataricus (-fes domain)
82c2hydB_



not modelled 96.5 26 PDB header:transport protein
Chain: B: PDB Molecule:abc transporter homolog;
PDBTitle: multidrug abc transporter sav1866
83c1ewqA_



not modelled 96.5 23 PDB header:replication/dna
Chain: A: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure taq muts complexed with a heteroduplex2 dna at 2.2 a resolution
84c3g5uB_



not modelled 96.5 31 PDB header:membrane protein
Chain: B: PDB Molecule:multidrug resistance protein 1a;
PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding
85d2i3ba1



not modelled 96.5 32 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
86c2o8dB_



not modelled 96.4 24 PDB header:dna binding protein/dna
Chain: B: PDB Molecule:dna mismatch repair protein msh6;
PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g du mispair
87d1wb9a2



not modelled 96.4 27 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
88c2o8bA_



not modelled 96.4 20 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:dna mismatch repair protein msh2;
PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g t mispair
89d2hyda1



not modelled 96.4 27 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
90c1f5nA_



96.3 11 PDB header:signaling protein
Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1;
PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp.
91d1ye8a1



not modelled 96.3 33 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
92c3ojaB_



96.3 14 PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
93c1ewrA_



not modelled 96.2 23 PDB header:hydrolase
Chain: A: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure of taq muts
94c3thxB_



not modelled 96.2 26 PDB header:dna binding protein/dna
Chain: B: PDB Molecule:dna mismatch repair protein msh3;
PDBTitle: human mutsbeta complexed with an idl of 3 bases (loop3) and adp
95c3ghgK_



96.1 11 PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
96c2cnwF_



not modelled 96.1 27 PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
97c2f1rA_



not modelled 96.1 10 PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis
PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb)
98d1yrba1



not modelled 96.1 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
99c3b5wE_



not modelled 96.1 28 PDB header:membrane protein
Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba;
PDBTitle: crystal structure of eschericia coli msba
100d1p9ra_



not modelled 96.1 27 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
101d1s96a_



not modelled 96.1 32 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
102c1wbdA_



not modelled 96.0 29 PDB header:dna-binding
Chain: A: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure of e. coli dna mismatch repair enzyme2 muts, e38q mutant, in complex with a g.t mismatch
103c3jvvA_



not modelled 96.0 38 PDB header:atp binding protein
Chain: A: PDB Molecule:twitching mobility protein;
PDBTitle: crystal structure of p. aeruginosa pilt with bound amp-pcp
104d1zp6a1



not modelled 96.0 35 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Atu3015-like
105d1znwa1



not modelled 96.0 36 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
106c1deqO_



96.0 12 PDB header:
PDB COMPND:
107c2j7pA_



not modelled 96.0 20 PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
108c3b9qA_



not modelled 95.9 27 PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
109c1ciiA_



95.9 14 PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
110c2qy9A_



not modelled 95.9 20 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy
111c2yhsA_



not modelled 95.9 20 PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy
112c2og2A_



not modelled 95.8 32 PDB header:protein transport
Chain: A: PDB Molecule:putative signal recognition particle receptor;
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
113c3geiB_



not modelled 95.7 33 PDB header:hydrolase
Chain: B: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from chlorobium tepidum in complex2 with gcp
114c1u9iA_



not modelled 95.7 30 PDB header:circadian clock protein
Chain: A: PDB Molecule:kaic;
PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites
115c1zu4A_



not modelled 95.7 32 PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
116d1nija1



not modelled 95.7 43 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
117c2eyuA_



not modelled 95.7 35 PDB header:protein transport
Chain: A: PDB Molecule:twitching motility protein pilt;
PDBTitle: the crystal structure of the c-terminal domain of aquifex2 aeolicus pilt
118d1g6oa_



not modelled 95.6 27 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
119c3b5xB_



not modelled 95.6 28 PDB header:membrane protein
Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba;
PDBTitle: crystal structure of msba from vibrio cholerae
120d1ki9a_



not modelled 95.6 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0