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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3g5uB_

Fold library idPDB HeaderMoleculeTitle
c3g5uB_PDB header: membrane proteinChain: B: PDB Molecule: multidrug resistance protein 1a;PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding


Added to library: Sun Aug 29 12:01:07 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAK
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Known secondary structure (DSSP)
TTT



SS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence LEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLT
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Known secondary structure (DSSP) TTSS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence DDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHA
Predicted secondary structure
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Known secondary structure (DSSP) TTTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence YAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWY
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Known secondary structure (DSSP) TTT




TT



STTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence GTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPD
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Known secondary structure (DSSP) SSS
SS
TTS




SS

S




T
 .........360.........370.........380.........390.........400.........410.........420
Sequence NIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ
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Known secondary structure (DSSP) T
S



SSTTS

S
TT


SSTTTTTSS

STT
 .........430.........440.........450.........460.........470.........480.........490
Sequence DIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE
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Known secondary structure (DSSP) GGGS
SS



SS

SS

TT
TTSTTGGG


SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNAD
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Known secondary structure (DSSP) SS
SS


SBTT
SS
TTSS
S
TT
S
 .........570.........580.........590.........600.........610.........620.........630
Sequence VIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTLDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGG
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Known secondary structure (DSSP)
SSS




TST









TTT



 .........640.........650.........660.........670.........680.........690.........700
Sequence LQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVF
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Known secondary structure (DSSP) SS
STT
 .........710.........720.........730.........740.........750.........760.........770
Sequence KSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLA
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Known secondary structure (DSSP)

S
S

SS
STT
 .........780.........790.........800.........810.........820.........830.........840
Sequence IVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMK
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Known secondary structure (DSSP) TT
TTTTT
SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence KAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATV
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Known secondary structure (DSSP)

TTTT
S
STTTSSSS
S
 .........920.........930.........940.........950.........960.........970.........980
Sequence SASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSG
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Known secondary structure (DSSP) S




SS
S




TTT





S
GGG

SS


SSS
SSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYE
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Known secondary structure (DSSP) TTTTSS

SSSSS
BTSS
TTS
SS



SSBT


SS



 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKV
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Known secondary structure (DSSP) T
SSTTTGGG
B
STTS
SS


SSS
SSS

 .........1130.........1140.........1150.........1160.........1170.........1180..
Sequence VQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQA
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Known secondary structure (DSSP) SSSS

S
TTGGGS
STB
S
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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