PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d2pmka1

Fold library id	Fold	Superfamily	Family
d2pmka1	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	ABC transporter ATPase domain-like

Links to external resources
Added to library: Tue Mar 16 14:39:20 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D I T F R N I R F R Y K P D S P V I L D N I N L S I K Q G E V I G I V G R S G S G K S T L T K L I Q R F Y I P E N G Q V L I D G H D L A L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T S
T T
S T T S S T T S S
S T T T T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D P N W L R R Q V G V V L Q D N V L L N R S I I D N I S L A N P G M S V E K V I Y A A K L A G A H D F I S E L R E G Y N T I V G E Q G A G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S B
T T S T T
T
T T S T T G G G S B
S T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S G G Q R Q R I A I A R A L V N N P K I L I F D E A T S A L D Y E S E H V I M R N M H K I C K G R T V I I I A H R L S T V K N A D R I I V M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S
T T S
S S G G G G T T S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 .

Sequence E K G K I V E Q G K H K E L L S E P E S L Y S Y L Y Q L Q S D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	I	T	F	R	N	I	R	F	R	Y	K	P	D	S	P	V	I	L	D	N	I	N	L	S	I	K	Q	G	E	V	I	G	I	V	G	R	S	G	S	G	K	S	T	L	T	K	L	I	Q	R	F	Y	I	P	E	N	G	Q	V	L	I	D	G	H	D	L	A	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S	T	T	S													T	T								S	T	T	S	S									T	T	S	S			S							T	T			T	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	P	N	W	L	R	R	Q	V	G	V	V	L	Q	D	N	V	L	L	N	R	S	I	I	D	N	I	S	L	A	N	P	G	M	S	V	E	K	V	I	Y	A	A	K	L	A	G	A	H	D	F	I	S	E	L	R	E	G	Y	N	T	I	V	G	E	Q	G	A	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S	S				T	T	S	B							T	T	S	T	T														T						T	T	S	T	T	G	G	G	S	B		S	T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	G	G	Q	R	Q	R	I	A	I	A	R	A	L	V	N	N	P	K	I	L	I	F	D	E	A	T	S	A	L	D	Y	E	S	E	H	V	I	M	R	N	M	H	K	I	C	K	G	R	T	V	I	I	I	A	H	R	L	S	T	V	K	N	A	D	R	I	I	V	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T			S									S																			T	T	S							S	S	G	G	G	G	T	T	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Sequence	E	K	G	K	I	V	E	Q	G	K	H	K	E	L	L	S	E	P	E	S	L	Y	S	Y	L	Y	Q	L	Q	S	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T														S	T	T