PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3a4mB_

Fold library id	PDB Header	Molecule	Title
c3a4mB_	PDB header: transferase	Chain: B: PDB Molecule: l-seryl-trna(sec) kinase;	PDBTitle: crystal structure of archaeal o-phosphoseryl-trna(sec)2 kinase

Links to external resources
Added to library: Sat Aug 28 21:51:34 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D I M L I I L T G L P G V G K S T F S K N L A K I L S K N N I D V I V L G S D L I R E S F P V W K E K Y E E F I K K S T Y R L I D S A L K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S T T
T T T S S S
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y W V I V D D T N Y Y N S M R R D L I N I A K K Y N K N Y A I I Y L K A S L D V L I R R N I E R G E K I P N E V I K K M Y E K F D E P G K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S T T
T T
S S
T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y K W D E P F L I I D T T K D I D F N E I A K K L I E K S K E I P K F N I S D K I D K E T R K I V S E Y I K S K K L D K D K I K E V V E L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S T T S
T S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . .

Sequence K E F L K K I K K V D A D R V L K E F K D L L N S Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	I	M	L	I	I	L	T	G	L	P	G	V	G	K	S	T	F	S	K	N	L	A	K	I	L	S	K	N	N	I	D	V	I	V	L	G	S	D	L	I	R	E	S	F	P	V	W	K	E	K	Y	E	E	F	I	K	K	S	T	Y	R	L	I	D	S	A	L	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	S	S															T	T								T					T	T	S	S	S			T	T																		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	W	V	I	V	D	D	T	N	Y	Y	N	S	M	R	R	D	L	I	N	I	A	K	K	Y	N	K	N	Y	A	I	I	Y	L	K	A	S	L	D	V	L	I	R	R	N	I	E	R	G	E	K	I	P	N	E	V	I	K	K	M	Y	E	K	F	D	E	P	G	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S						S				S														T	T																						T	T		S	S															T	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	K	W	D	E	P	F	L	I	I	D	T	T	K	D	I	D	F	N	E	I	A	K	K	L	I	E	K	S	K	E	I	P	K	F	N	I	S	D	K	I	D	K	E	T	R	K	I	V	S	E	Y	I	K	S	K	K	L	D	K	D	K	I	K	E	V	V	E	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G			S					T	T	S																T	S																									T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Sequence	K	E	F	L	K	K	I	K	K	V	D	A	D	R	V	L	K	E	F	K	D	L	L	N	S	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)