26/01/2012 04:20:13 : INFO  : Run start: Thu Jan 26 04:20:12 GMT 2012
26/01/2012 04:20:15 : INFO  : Initialised job
26/01/2012 04:20:16 : INFO  : Renaming log file 'phyre2_20120126_042011.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/phyre_20120126_042011.log'
26/01/2012 04:20:17 : INFO  : Initialised job:
Sequence
>batch____
MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF
RNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKP
FAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAMEGVQFKQFNSITDYHSLMFD
LGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR
ENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMRHANERRVHLDKALEFRRELHTSRQ
QLAAEQYKHVDMARELAEHNGAEGDLEADYQAASDHLNLVQTALRQQEKIERYEADLDEL
QIRLEEQNEVVAEAIERQQENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYNQAI
AALNRAKELCHLPDLTADCAAEWLETFQAKELEATEKMLSLEQKMSMAQTAHSQFEQAYQ
LVVAINGPLARNEAWDVARELLREGVDQRHLAEQVQPLRMRLSELEQRLREQQEAERLLA
DFCKRQGKNFDIDELEALHQELEARIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQR
APVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEI
ERLSQPGGSEDQRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQV
TEHLEGLTDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGR
AARESRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSRFIGSHLAVAFESDPEAEIRQ
LNSRRVELERALSNHENDNQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRE
RLDEAQEAARFVQQFGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFAL
TEVVQRRAHFSYSDSAEMLSGNSDLNEKLRERLEQAEAERTRAREALRGHAAQLSQYNQV
LASLKSSYDTKKELLNDLQRELQDIGVRADSGAEERARIRRDELHAQLSNNRSRRNQLEK
ALTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAY
LSADDLRSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAVYQHLRERIRQ
DIIRTDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRMLNQ
GLQNVSFGQVNSVRLNVNVRETHAMLLDVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLN
PQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSILVM
VVQSWEDESRRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPENISP
EKGTTYKLVRKVFQNTEHVHVVGLRGFAPQLPETLPGTDEAPSQAS

26/01/2012 04:20:18 : INFO  : Checked sequence
26/01/2012 04:20:19 : INFO  : Finding homologues with PSI-BLAST
26/01/2012 04:20:20 : INFO  : PSI-BLAST 3 iterations
26/01/2012 04:26:52 : INFO  : PSI-BLAST 5 iterations
26/01/2012 04:41:25 : INFO  : Finished PSI-BLAST
26/01/2012 04:41:27 : INFO  : Running Buildali to generate a3m file
26/01/2012 06:54:04 : INFO  : Converting to HMM
26/01/2012 07:02:42 : INFO  : Calibrating HMM
26/01/2012 07:03:41 : INFO  : Searching HMM database
26/01/2012 07:36:41 : INFO  : Finished buildali
26/01/2012 07:36:43 : INFO  : Predicting secondary structure
26/01/2012 07:36:53 : INFO  : Predicted secondary structure (PSI-Pred)
26/01/2012 07:36:55 : INFO  : Predicting Disordered regions
26/01/2012 07:37:00 : INFO  : Predicted Disorder (Disopred)
26/01/2012 07:37:02 : INFO  : Running memsat_svm check
26/01/2012 07:44:34 : INFO  : Globular protein
26/01/2012 07:44:35 : INFO  : Predicted Transmembrane (memsat_svm) ID '067380b0756e9b95'
26/01/2012 07:44:37 : INFO  : Initialising fold library search
26/01/2012 07:44:41 : INFO  : Initialised search input
26/01/2012 07:44:44 : INFO  : Building Ensemble models
26/01/2012 07:44:48 : INFO  : Building hh.c3eukC_.model.1.pdb
26/01/2012 07:45:08 : INFO  : Building hh.d1qhla_.model.2.pdb
26/01/2012 07:45:22 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/hh.d1qhla_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/d1qhla_.2.pdb
26/01/2012 07:45:27 : INFO  : Building hh.c3qg5A_.model.3.pdb
26/01/2012 07:45:41 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/hh.c3qg5A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/c3qg5A_.3.pdb
26/01/2012 07:45:46 : INFO  : Building hh.c3ibpA_.model.4.pdb
26/01/2012 07:46:02 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/hh.c3ibpA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/c3ibpA_.14.pdb
26/01/2012 07:46:07 : INFO  : Building hh.c1c1gA_.model.5.pdb
26/01/2012 07:46:21 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/hh.c1c1gA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/c1c1gA_.62.pdb
26/01/2012 07:46:26 : INFO  : Building hh.c1f5nA_.model.6.pdb
26/01/2012 07:46:41 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/hh.c1f5nA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/c1f5nA_.90.pdb
26/01/2012 07:46:46 : INFO  : Building hh.c3ojaB_.model.7.pdb
26/01/2012 07:47:01 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/hh.c3ojaB_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/c3ojaB_.92.pdb
26/01/2012 07:47:06 : INFO  : Building hh.c3ghgK_.model.8.pdb
26/01/2012 07:47:21 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/hh.c3ghgK_.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/c3ghgK_.95.pdb
26/01/2012 07:47:26 : INFO  : Building hh.c1deqO_.model.9.pdb
26/01/2012 07:47:37 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/hh.c1deqO_.model.9.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/c1deqO_.106.pdb
26/01/2012 07:47:41 : INFO  : Building hh.c1ciiA_.model.10.pdb
26/01/2012 07:47:57 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/hh.c1ciiA_.model.10.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/067380b0756e9b95/c1ciiA_.109.pdb
26/01/2012 07:48:02 : INFO  : Building c3eukC_.1.pdb
26/01/2012 07:48:20 : INFO  : Building d1qhla_.2.pdb
26/01/2012 07:48:37 : INFO  : Building c3qg5A_.3.pdb
26/01/2012 07:48:54 : INFO  : Building c1xexA_.4.pdb
26/01/2012 07:49:11 : INFO  : Building c3qkuB_.5.pdb
26/01/2012 07:49:28 : INFO  : Building c3auyB_.6.pdb
26/01/2012 07:49:43 : INFO  : Building c1ii8A_.7.pdb
26/01/2012 07:50:01 : INFO  : Building d1w1wa_.8.pdb
26/01/2012 07:50:17 : INFO  : Building d1e69a_.9.pdb
26/01/2012 07:50:34 : INFO  : Building c2o5vA_.10.pdb
26/01/2012 07:50:51 : INFO  : Building c1us8A_.11.pdb
26/01/2012 07:51:08 : INFO  : Building c1ii8B_.12.pdb
26/01/2012 07:51:24 : INFO  : Building c1xexB_.13.pdb
26/01/2012 07:51:41 : INFO  : Building c3ibpA_.14.pdb
26/01/2012 07:51:57 : INFO  : Building d1v43a3.15.pdb
26/01/2012 07:52:13 : INFO  : Building c1z47B_.16.pdb
26/01/2012 07:52:30 : INFO  : Building c1vciA_.17.pdb
26/01/2012 07:52:47 : INFO  : Building d2awna2.18.pdb
26/01/2012 07:53:03 : INFO  : Building d1g2912.19.pdb
26/01/2012 07:53:22 : INFO  : Building c2it1B_.20.pdb
26/01/2012 07:57:07 : INFO  : Finished HH model building
26/01/2012 07:57:09 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
26/01/2012 07:58:35 : INFO  : html domain output complete ID '067380b0756e9b95'
26/01/2012 08:25:21 : INFO  : Run end  : Thu Jan 26 08:25:20 GMT 2012
