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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c1vciA_

Fold library idPDB HeaderMoleculeTitle
c1vciA_PDB header: transport proteinChain: A: PDB Molecule: sugar-binding transport atp-binding protein;PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp


Added to library: Tue Mar 16 14:01:21 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VIKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV
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Known secondary structure (DSSP)





TT
TT


TTSSTSS

STT
 .........80.........90.........100.........110.........120.........130.........140
Sequence TYLPPKDRNISMVFQHMTVYENIAFPLKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVA
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Known secondary structure (DSSP) TTS
GGGTT




TT




TT
GGGTT

GGG

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI
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Known secondary structure (DSSP) TT

SSTTTTS


S

STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence GSPTEVYLRPNSVFVATFIGAPEMNILEVSVGDGYLEGRGFRIELPQMDLLKDYVGKTVLFGIRPEHMTV
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Known secondary structure (DSSP)
S
SBSSSS


SSTT




TTGGGBTS
GGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence EGVHMKRTARLIGKVDFVEALGTDTILHVKFGDELVKVKLPGHIPIEPGREVKVIMDLDMIHVFDKDTEK
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Known secondary structure (DSSP) S



SS
SSTTS




TT
GGG
TTT
B
 ...
Sequence AIV
Predicted secondary structure


SS confidence


Known secondary structure (DSSP) B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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