Email l.a.kelley@imperial.ac.uk Description P38506 Date Thu Jan 5 11:58:11 GMT 2012 Unique Job ID d579a4b82185ab5a

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1cmwA_ 100.0 31 PDB header:transferase Chain: A: PDB Molecule:protein (dna polymerase i); PDBTitle: crystal structure of taq dna-polymerase shows a new2 orientation for the structure-specific nuclease domain 2 c1ut8B_ 100.0 24 PDB header:hydrolase Chain: B: PDB Molecule:exodeoxyribonuclease; PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease 3 c2ihnA_ 100.0 16 PDB header:hydrolase/dna Chain: A: PDB Molecule:ribonuclease h; PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate 4 c1rxvA_ 100.0 17 PDB header:hydrolase/dna Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: crystal structure of a. fulgidus fen-1 bound to dna 5 c3q8lA_ 100.0 21 PDB header:hydrolase/dna Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+ 6 c1a77A_ 100.0 16 PDB header:5'-3' exo/endo nuclease Chain: A: PDB Molecule:flap endonuclease-1 protein; PDBTitle: flap endonuclease-1 from methanococcus jannaschii 7 c1b43A_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:protein (fen-1); PDBTitle: fen-1 from p. furiosus 8 c3oryA_ 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of flap endonuclease 1 from hyperthermophilic2 archaeon desulfurococcus amylolyticus 9 d1cmwa2 100.0 27 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 10 c2izoA_ 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: structure of an archaeal pcna1-pcna2-fen1 complex 11 c1ul1Y_ 100.0 21 PDB header:hydrolase/dna binding protein Chain: Y: PDB Molecule:flap endonuclease-1; PDBTitle: crystal structure of the human fen1-pcna complex 12 c3qeaZ_ 100.0 16 PDB header:hydrolase/dna Chain: Z: PDB Molecule:exonuclease 1; PDBTitle: crystal structure of human exonuclease 1 exo1 (wt) in complex with dna2 (complex ii) 13 d1xo1a2 100.0 21 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 14 d1tfra2 100.0 18 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 15 d1cmwa1 99.9 38 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 16 d1xo1a1 99.8 22 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 17 d1ul1x2 99.8 17 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 18 d1b43a2 99.8 20 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 19 d1rxwa2 99.8 19 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 20 d1a77a2 99.7 13 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 21 d1mc8a2 not modelled 99.7 19 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 22 d1rxwa1 not modelled 99.6 19 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 23 d1ul1x1 not modelled 99.6 25 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 24 d1a77a1 not modelled 99.6 22 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 25 d1b43a1 not modelled 99.5 20 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 26 d1mc8a1 not modelled 99.5 23 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 27 d1x2ia1 not modelled 97.2 23 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 28 d2bgwa1 not modelled 97.0 26 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 29 c2y35A_ not modelled 96.8 18 PDB header:hydrolase/dna Chain: A: PDB Molecule:ld22664p; PDBTitle: crystal structure of xrn1-substrate complex 30 c1kftA_ not modelled 96.8 23 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 31 d1kfta_ not modelled 96.8 23 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 32 c2nrzB_ not modelled 96.7 26 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 33 c3fqdA_ not modelled 96.6 18 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:5'-3' exoribonuclease 2; PDBTitle: crystal structure of the s. pombe rat1-rai1 complex 34 d2a1jb1 not modelled 96.5 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 35 d1dgsa1 not modelled 96.5 20 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 36 d1cuka2 not modelled 95.8 24 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 37 d2i1qa1 not modelled 95.7 19 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 38 d1pzna1 not modelled 95.6 25 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 39 d1ixra1 not modelled 95.3 32 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 40 c3pifD_ not modelled 94.9 15 PDB header:hydrolase Chain: D: PDB Molecule:5'->3' exoribonuclease (xrn1); PDBTitle: crystal structure of the 5'->3' exoribonuclease xrn1, e178q mutant in2 complex with manganese 41 c1hjpA_ not modelled 94.9 27 PDB header:dna recombination Chain: A: PDB Molecule:ruva; PDBTitle: holliday junction binding protein ruva from e. coli 42 d2aq0a1 not modelled 94.8 12 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 43 c1ixrA_ not modelled 94.8 18 PDB header:hydrolase Chain: A: PDB Molecule:holliday junction dna helicase ruva; PDBTitle: ruva-ruvb complex 44 c1d8lA_ not modelled 94.7 21 PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii 45 c2owoA_ not modelled 94.5 18 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 46 d1bvsa2 not modelled 94.5 16 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 47 c2h5xA_ not modelled 94.4 24 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis 48 c2w9mB_ not modelled 94.4 30 PDB header:dna replication Chain: B: PDB Molecule:polymerase x; PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans 49 c1dgsB_ not modelled 94.3 20 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 50 c1v9pB_ not modelled 94.2 18 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 51 d2p6ra2 not modelled 92.6 17 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Achaeal helicase C-terminal domain 52 c8iczA_ not modelled 92.4 30 PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7)); PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar) 53 c1nomA_ not modelled 92.2 33 PDB header:nucleotidyltransferase Chain: A: PDB Molecule:dna polymerase beta; PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar) 54 d2vana1 not modelled 92.0 33 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 55 d2fmpa2 not modelled 91.7 30 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 56 c2bhnD_ not modelled 91.6 28 PDB header:hydrolase Chain: D: PDB Molecule:xpf endonuclease; PDBTitle: xpf from aeropyrum pernix 57 c2ihmA_ not modelled 91.0 21 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide 58 d1szpa1 not modelled 90.8 18 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 59 c2qipA_ not modelled 90.6 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein of unknown function vpa0982; PDBTitle: crystal structure of a protein of unknown function vpa0982 from vibrio2 parahaemolyticus rimd 2210633 60 c2ziuA_ not modelled 90.5 11 PDB header:hydrolase Chain: A: PDB Molecule:mus81 protein; PDBTitle: crystal structure of the mus81-eme1 complex 61 c3majA_ not modelled 89.6 25 PDB header:dna binding protein Chain: A: PDB Molecule:dna processing chain a; PDBTitle: crystal structure of putative dna processing protein dpra from2 rhodopseudomonas palustris cga009 62 d2bcqa2 not modelled 89.2 35 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 63 c1s5lu_ not modelled 89.0 22 PDB header:photosynthesis Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 64 d1jmsa3 not modelled 88.1 19 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 65 d2axtu1 not modelled 86.2 19 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:PsbU-like 66 c1kdhA_ not modelled 85.7 31 PDB header:transferase/dna Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna 67 c2va8A_ not modelled 85.5 24 PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 68 c2bcuA_ not modelled 85.3 35 PDB header:transferase, lyase/dna Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch 69 c3c1zA_ not modelled 85.1 18 PDB header:dna binding protein Chain: A: PDB Molecule:dna integrity scanning protein disa; PDBTitle: structure of the ligand-free form of a bacterial dna damage2 sensor protein 70 c2csdB_ not modelled 83.7 35 PDB header:isomerase Chain: B: PDB Molecule:topoisomerase v; PDBTitle: crystal structure of topoisomerase v (61 kda fragment) 71 d1b22a_ not modelled 83.6 18 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 72 c1b22A_ not modelled 83.6 18 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: rad51 (n-terminal domain) 73 c2p6uA_ not modelled 83.5 17 PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase 74 d2duya1 not modelled 81.8 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 75 d2i5ha1 not modelled 81.5 19 Fold:AF1531-like Superfamily:AF1531-like Family:AF1531-like 76 c2i5hA_ not modelled 81.5 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1531; PDBTitle: crystal structure of af1531 from archaeoglobus fulgidus,2 pfam duf655 77 d2csba3 not modelled 81.2 30 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 78 d2edua1 not modelled 79.5 24 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 79 c3d4oA_ not modelled 79.5 22 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit a; PDBTitle: crystal structure of dipicolinate synthase subunit a (np_243269.1)2 from bacillus halodurans at 2.10 a resolution 80 c3r2jC_ not modelled 79.2 12 PDB header:hydrolase Chain: C: PDB Molecule:alpha/beta-hydrolase-like protein; PDBTitle: crystal structure of pnc1 from l. infantum in complex with nicotinate 81 c1vddC_ not modelled 77.9 32 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 82 d1vdda_ not modelled 73.7 32 Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR 83 c3fhgA_ not modelled 72.3 28 PDB header:dna repair, hydrolase, lyase Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of sulfolobus solfataricus 8-oxoguanine dna2 glycosylase (ssogg) 84 c3kntC_ not modelled 71.3 28 PDB header:hydrolase, lyase/dna Chain: C: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of methanocaldococcus jannaschii 8-2 oxoguanine glycosylase/lyase in complex with 15mer dna3 containing 8-oxoguanine 85 c2zixA_ not modelled 70.3 19 PDB header:hydrolase Chain: A: PDB Molecule:crossover junction endonuclease mus81; PDBTitle: crystal structure of the mus81-eme1 complex 86 c2vg2C_ not modelled 69.2 25 PDB header:transferase Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase; PDBTitle: rv2361 with ipp 87 c3n0uB_ not modelled 67.7 33 PDB header:hydrolase, lyase Chain: B: PDB Molecule:probable n-glycosylase/dna lyase; PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima 88 c1jp3A_ not modelled 64.7 10 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: structure of e.coli undecaprenyl pyrophosphate synthase 89 d1pu6a_ not modelled 63.8 43 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase III (MagIII) 90 d1ueha_ not modelled 62.8 10 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 91 c2fq1A_ not modelled 62.5 17 PDB header:hydrolase Chain: A: PDB Molecule:isochorismatase; PDBTitle: crystal structure of the two-domain non-ribosomal peptide synthetase2 entb containing isochorismate lyase and aryl-carrier protein domains 92 c1yzvA_ not modelled 61.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: hypothetical protein from trypanosoma cruzi 93 c3s6iA_ not modelled 60.1 36 PDB header:hydrolase/dna Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1; PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna. 94 c3irvA_ not modelled 59.7 14 PDB header:hydrolase Chain: A: PDB Molecule:cysteine hydrolase; PDBTitle: crystal structure of cysteine hydrolase pspph_2384 from pseudomonas2 syringae pv. phaseolicola 1448a 95 d1szpb1 not modelled 56.9 17 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 96 d2noha1 not modelled 56.7 21 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 97 c2d2rA_ not modelled 56.4 12 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase 98 d3bzka1 not modelled 56.2 12 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Tex HhH-containing domain-like 99 d1jmsa1 not modelled 55.3 17 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 100 d1keaa_ not modelled 55.2 14 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 101 d1f75a_ not modelled 54.8 16 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 102 d1orna_ not modelled 54.6 18 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 103 d1nf9a_ not modelled 53.9 17 Fold:Isochorismatase-like hydrolases Superfamily:Isochorismatase-like hydrolases Family:Isochorismatase-like hydrolases 104 d1yaca_ not modelled 52.7 16 Fold:Isochorismatase-like hydrolases Superfamily:Isochorismatase-like hydrolases Family:Isochorismatase-like hydrolases 105 d1kg2a_ not modelled 52.7 27 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 106 d1im5a_ not modelled 52.6 14 Fold:Isochorismatase-like hydrolases Superfamily:Isochorismatase-like hydrolases Family:Isochorismatase-like hydrolases 107 c2j4dA_ not modelled 52.6 17 PDB header:dna-binding protein Chain: A: PDB Molecule:cryptochrome dash; PDBTitle: cryptochrome 3 from arabidopsis thaliana 108 c3o93A_ not modelled 52.1 24 PDB header:hydrolase Chain: A: PDB Molecule:nicotinamidase; PDBTitle: high resolution crystal structures of streptococcus pneumoniae2 nicotinamidase with trapped intermediates provide insights into3 catalytic mechanism and inhibition by aldehydes 109 d1mpga1 not modelled 51.8 29 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 110 c3n5nX_ not modelled 51.8 23 PDB header:hydrolase Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase; PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue 111 d1j2ra_ not modelled 50.8 17 Fold:Isochorismatase-like hydrolases Superfamily:Isochorismatase-like hydrolases Family:Isochorismatase-like hydrolases 112 d2abka_ not modelled 50.4 38 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 113 c3eefA_ not modelled 50.4 17 PDB header:hydrolase Chain: A: PDB Molecule:n-carbamoylsarcosine amidase related protein; PDBTitle: crystal structure of n-carbamoylsarcosine amidase from thermoplasma2 acidophilum 114 c3hu5B_ not modelled 50.2 19 PDB header:hydrolase Chain: B: PDB Molecule:isochorismatase family protein; PDBTitle: crystal structure of isochorismatase family protein from desulfovibrio2 vulgaris subsp. vulgaris str. hildenborough 115 c3f10A_ not modelled 49.9 22 PDB header:hydrolase, lyase Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase; PDBTitle: crystal structure of clostridium acetobutylicum 8-2 oxoguanine dna glycosylase in complex with 8-oxoguanosine 116 c3mcwA_ not modelled 48.7 12 PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of an a putative hydrolase of the isochorismatase2 family (cv_1320) from chromobacterium violaceum atcc 12472 at 1.06 a3 resolution 117 c2jhnB_ not modelled 48.4 36 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna-glycosylase; PDBTitle: 3-methyladenine dna-glycosylase from archaeoglobus fulgidus 118 d2a1ja1 not modelled 48.3 16 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 119 d1rrqa1 not modelled 48.2 29 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 120 c2yg8B_ not modelled 47.1 38 PDB header:hydrolase Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative; PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans