PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1kdhA_

Fold library id	PDB Header	Molecule	Title
c1kdhA_	PDB header: transferase/dna	Chain: A: PDB Molecule: terminal deoxynucleotidyltransferase short	PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna

Links to external resources
Added to library: Tue Mar 16 12:28:03 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K K I S Q Y A C Q R R T T L N N Y N Q L F T D A L D I L A E N D E L R E N E G S C L A F M R A S S V L K S L P F P I T S M K D T E G I P C L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S G G G S
B
S
S
T T
T
S S
S G G G G T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G D K V K S I I E G I I E D G E S S E A K A V L N D E R Y K S F K L F T S V F G V G L K T A E K W F R M G F R T L S K I Q S D K S L R F T Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T S T T
T T
S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence M Q K A G F L Y Y E D L V S C V N R P E A E A V S M L V K E A V V T F L P D A L V T M T G G F R R G K M T G H D V D F L I T S P E A T E D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
B
T T
T T G G G T
S
B S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence E Q Q L L H K V T D F W K Q Q G L L L Y C D I L E S T F E K F K Q P S R L D H F Q K C F L I L K L D H G R V H S E K S E G K G W K A I R V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T
S G G G
S S
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L V M C P Y D R R A F A L L G W T G S R Q F E R D L R R Y A T H E R K M M L D N H A L Y D R T K R V F L E A E S E E E I F A H L G L D Y I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S S
S
S S
T T T T
S S T

. . . . . .

Sequence P W E R N A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G B

Download: PDB structure FASTA sequence
Hidden Markov model

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	K	I	S	Q	Y	A	C	Q	R	R	T	T	L	N	N	Y	N	Q	L	F	T	D	A	L	D	I	L	A	E	N	D	E	L	R	E	N	E	G	S	C	L	A	F	M	R	A	S	S	V	L	K	S	L	P	F	P	I	T	S	M	K	D	T	E	G	I	P	C	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	G	G	G	S		B		S			S																		T	T																	T		S	S				S	G	G	G	G	T	T		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	D	K	V	K	S	I	I	E	G	I	I	E	D	G	E	S	S	E	A	K	A	V	L	N	D	E	R	Y	K	S	F	K	L	F	T	S	V	F	G	V	G	L	K	T	A	E	K	W	F	R	M	G	F	R	T	L	S	K	I	Q	S	D	K	S	L	R	F	T	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	S																					T	S	T	T												T	T			S								S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	M	Q	K	A	G	F	L	Y	Y	E	D	L	V	S	C	V	N	R	P	E	A	E	A	V	S	M	L	V	K	E	A	V	V	T	F	L	P	D	A	L	V	T	M	T	G	G	F	R	R	G	K	M	T	G	H	D	V	D	F	L	I	T	S	P	E	A	T	E	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T						S		B																					T	T							T	T	G	G	G	T		S		B	S									S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	E	Q	Q	L	L	H	K	V	T	D	F	W	K	Q	Q	G	L	L	L	Y	C	D	I	L	E	S	T	F	E	K	F	K	Q	P	S	R	L	D	H	F	Q	K	C	F	L	I	L	K	L	D	H	G	R	V	H	S	E	K	S	E	G	K	G	W	K	A	I	R	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	T														T	T										S										G	G	G			S	S					S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	V	M	C	P	Y	D	R	R	A	F	A	L	L	G	W	T	G	S	R	Q	F	E	R	D	L	R	R	Y	A	T	H	E	R	K	M	M	L	D	N	H	A	L	Y	D	R	T	K	R	V	F	L	E	A	E	S	E	E	E	I	F	A	H	L	G	L	D	Y	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T									S	S																	S					S	S					T	T	T	T						S	S									T
	.	.	.	.	.	.
Sequence	P	W	E	R	N	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	B