PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2d2rA_

Fold library id	PDB Header	Molecule	Title
c2d2rA_	PDB header: transferase	Chain: A: PDB Molecule: undecaprenyl pyrophosphate synthase;	PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase

Links to external resources
Added to library: Tue Mar 16 13:28:31 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S T L K H L A I I M D G N G R W A K L K N K A R A Y G H K K G V K T L K D I T I W C A N H K L E C L T L Y A F E V D F L M K M L K K Y L K D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E R S T Y L D N N I R F R A I G D L E G F S K E L R D T I L Q L E N D T R H F K D F T Q V L A L N Y G S K N E L S R A F K S L L E S P P S N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
G G G S
T T
S
S
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I S L L E S L E N E I S N R L D T R N L P E V D L L L R T G G E M R L S N F L L W Q S S Y A E L F F T P I L W P D F T P K D L E N I I S D F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S
T T S T T T T S
S
S S
T T S S T T T T T T
S
G G G

. . . . .

Sequence Y K R V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	T	L	K	H	L	A	I	I	M	D	G	N	G	R	W	A	K	L	K	N	K	A	R	A	Y	G	H	K	K	G	V	K	T	L	K	D	I	T	I	W	C	A	N	H	K	L	E	C	L	T	L	Y	A	F	E	V	D	F	L	M	K	M	L	K	K	Y	L	K	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T	T																							T	T	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	R	S	T	Y	L	D	N	N	I	R	F	R	A	I	G	D	L	E	G	F	S	K	E	L	R	D	T	I	L	Q	L	E	N	D	T	R	H	F	K	D	F	T	Q	V	L	A	L	N	Y	G	S	K	N	E	L	S	R	A	F	K	S	L	L	E	S	P	P	S	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T							S		G	G	G	S																T	T			S								S																	S			T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	S	L	L	E	S	L	E	N	E	I	S	N	R	L	D	T	R	N	L	P	E	V	D	L	L	L	R	T	G	G	E	M	R	L	S	N	F	L	L	W	Q	S	S	Y	A	E	L	F	F	T	P	I	L	W	P	D	F	T	P	K	D	L	E	N	I	I	S	D	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G		S								T	T	S	T	T	T	T	S				S						S	S					T	T	S	S	T	T	T	T	T	T								S		G	G	G
	.	.	.	.	.
Sequence	Y	K	R	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)