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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2y35A_

Fold library idPDB HeaderMoleculeTitle
c2y35A_PDB header: hydrolase/dnaChain: A: PDB Molecule: ld22664p;PDBTitle: crystal structure of xrn1-substrate complex


Added to library: Sat Mar 19 08:51:31 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MGVPKFFRYISERYPCLSELAREHCIPEFDNLYLDMNGIVHNCSHPFHLEEEQIFQEIFNYVDKLFYLIK
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Known secondary structure (DSSP)

S
SGGGTTTS


S






 .........80.........90.........100.........110.........120.........130.........140
Sequence PQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRRFDSNCITPGTEFMVRLQEGLRAFLKTK
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Known secondary structure (DSSP)
SS


S





SGGGSTTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence ISTDPLWQRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVL
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Known secondary structure (DSSP)
GGGSSS
SSS
S
STT

TT



STT
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence REEVKFGRNVKRTSVEETRFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHL
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Known secondary structure (DSSP) SS
TT

TT


GGG
GGGG

SSS




TTS


 .........290.........300.........310.........320.........330.........340.........350
Sequence PCLHISSNALPLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISALTEVELDHFKEHADDDENAVLLKEF
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Known secondary structure (DSSP) TT

TTTTGGGSSS
STT
S


 .........360.........370.........380.........390.........400.........410.........420
Sequence QNYKRNFYRNKFKRDPNDELIEELCHHYVNALQWVLDYYYRGVQSWDWYYPFHYTPFISDLKNIEQVEIA
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Known secondary structure (DSSP)
S


TS
S
SS




SS


GGG



TT



 .........430.........440.........450.........460.........470.........480.........490
Sequence FHMGTPFLPFQQLLAVLPAASAKLLPVAYHDLMLLPTSPLAEFYPLEFESDLNGKKHDWEAVVLIPFIDE
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GGGGGGS
GGG
TT
TTGGGS
SS




SS

SGGGS







 .........500.........510.........520.........530.........540.........550.........560
Sequence GRLLAAMLPCEAQLSLEERERNRHGPMYVYKYSTVAQGPMPAYPPLRALPVLYCTEVAKWSHEIAVNLPY
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Known secondary structure (DSSP) TTS
TTS



SS



B

BTTB

BS



GGGS



SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence SVCIELPNAARTVFFPGFPTMQHLPFDFELRNDRVKVFEQVSRNQNIVLKPRKRQLEDTLTAVASQYLGK
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Known secondary structure (DSSP)
S
S

TTS
SSSBBTTB

STTS





SSSS

SS



SS
SSTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence VIHVGWPHLVKAIVVRVATRDQRVDSEGITLNDSRRFDSECKALQEHFINRMGIQFANYDVLVYVRTFAG
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Known secondary structure (DSSP) SSSS
SSTT


B

S

S


 .........710.........720.........730.........740.........750.........760.........770
Sequence NSTEFRDKGALMVRDSWSSSVTGYPAQGVVADLTVWERKNFLNVEHYFPVGSTIFLITDPYYGSEGTVQD
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Known secondary structure (DSSP) TTT


SS
GGG
S

B






SS
TT

SGGGTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence PRRIQVSIMVRPEPKVNAARQLQEERDRDYLSTFQVCNLLRISGRTLGRLSGTVWVVHNIGLQLKYPRQN
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TT

S

B


B
S


TTTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence EERAGYCFRTNNQWYYSSLAVDLMRNYCQRYPDVIDFFGDSNGHRRVEELANWVRQQPHMKVERISCGSK
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Known secondary structure (DSSP) TTTSSS





TTSGGGTS
TT
B
 .........920.........930.........940.........950.........960.........970.........980
Sequence TVCRETIELLIAAVDDLRKHVKLQVKPHLLIKPNVTLPDVYRSKRPVRLFDRVVIVRTIYMVPVGTKGTV
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Known secondary structure (DSSP)






GGG
TTTS
TTTTS
SS


TT

S
BTTB
TT
 .........990.........1000.........1010.........1020......
Sequence IGIHPVTDPNPVRLECVHAVDTFCKVLFDSPVRVYKVPEIALVIIK
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Known secondary structure (DSSP)

B
SS
SSTTTTT
SS


GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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