PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3kntC_

Fold library id	PDB Header	Molecule	Title
c3kntC_	PDB header: hydrolase, lyase/dna	Chain: C: PDB Molecule: n-glycosylase/dna lyase;	PDBTitle: crystal structure of methanocaldococcus jannaschii 8-2 oxoguanine glycosylase/lyase in complex with 15mer dna3 containing 8-oxoguanine

Links to external resources
Added to library: Sat Aug 28 23:31:31 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L I K K I E E L K N S E I K D I I D K R I Q E F K S F K N K S N E E W F K E L C F C I L T A N F T A E G G I R I Q K E I G D G F L T L P R E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T G G G G
T S T T S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E L E E K L K N L G H R F Y R K R A E Y I V L A R R F K N I K D I V E S F E N E K V A R E F L V R N I K G I G Y Q E A S H F L R N V G Y D D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T G G G G
S S S S T T
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . .

Sequence V A I I D R H I L R E L Y E N N Y I D E I P K T L S R R K Y L E I E N I L R D I G E E V N L K L S E L D L Y I W Y L R T G K V L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S S S
S S
T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	I	K	K	I	E	E	L	K	N	S	E	I	K	D	I	I	D	K	R	I	Q	E	F	K	S	F	K	N	K	S	N	E	E	W	F	K	E	L	C	F	C	I	L	T	A	N	F	T	A	E	G	G	I	R	I	Q	K	E	I	G	D	G	F	L	T	L	P	R	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	T														G	G	G	G															T	S	T	T	S													T	T					S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	L	E	E	K	L	K	N	L	G	H	R	F	Y	R	K	R	A	E	Y	I	V	L	A	R	R	F	K	N	I	K	D	I	V	E	S	F	E	N	E	K	V	A	R	E	F	L	V	R	N	I	K	G	I	G	Y	Q	E	A	S	H	F	L	R	N	V	G	Y	D	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T		T	T											G	G	G	G										S	S	S												S	T	T													T	T			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Sequence	V	A	I	I	D	R	H	I	L	R	E	L	Y	E	N	N	Y	I	D	E	I	P	K	T	L	S	R	R	K	Y	L	E	I	E	N	I	L	R	D	I	G	E	E	V	N	L	K	L	S	E	L	D	L	Y	I	W	Y	L	R	T	G	K	V	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T	S	S	S	S			S	S																					T																S