PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1orna_

Fold library id	Fold	Superfamily	Family
d1orna_	DNA-glycosylase	DNA-glycosylase	Endonuclease III

Links to external resources
Added to library: Tue Mar 16 12:25:17 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M L T K Q Q I R Y C L D E M A K M F P D A H C E L V H R N P F E L L I A V V L S A Q C T D A L V N K V T K R L F E K Y R T P H D Y I A V P L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S S T T S
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E E L E Q D I R S I G L Y R N K A R N I Q K L C A M L I D K Y N G E V P R D R D E L M K L P G V G R K T A N V V V S V A F G V P A I A V D T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T G G G S S S T T S
S
T T S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H V E R V S K R L G F C R W D D S V L E V E K T L M K I I P K E E W S I T H H R M I F F G R Y H C K A Q S P Q C P S C P L L H L C R E G K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
T T
S
G G G T S
S S
G G G
T T G G G

. . . .

Sequence R M R K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	L	T	K	Q	Q	I	R	Y	C	L	D	E	M	A	K	M	F	P	D	A	H	C	E	L	V	H	R	N	P	F	E	L	L	I	A	V	V	L	S	A	Q	C	T	D	A	L	V	N	K	V	T	K	R	L	F	E	K	Y	R	T	P	H	D	Y	I	A	V	P	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T					S			S	S												T	T	S																		S						S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	E	L	E	Q	D	I	R	S	I	G	L	Y	R	N	K	A	R	N	I	Q	K	L	C	A	M	L	I	D	K	Y	N	G	E	V	P	R	D	R	D	E	L	M	K	L	P	G	V	G	R	K	T	A	N	V	V	V	S	V	A	F	G	V	P	A	I	A	V	D	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	G	G	G	S	S																			S	T	T	S			S						T	T	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	V	E	R	V	S	K	R	L	G	F	C	R	W	D	D	S	V	L	E	V	E	K	T	L	M	K	I	I	P	K	E	E	W	S	I	T	H	H	R	M	I	F	F	G	R	Y	H	C	K	A	Q	S	P	Q	C	P	S	C	P	L	L	H	L	C	R	E	G	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	S	S		T	T														S		G	G	G															T	S		S	S				G	G	G		T	T	G	G	G
	.	.	.	.
Sequence	R	M	R	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T