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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3pifD_

Fold library idPDB HeaderMoleculeTitle
c3pifD_PDB header: hydrolaseChain: D: PDB Molecule: 5'->3' exoribonuclease (xrn1);PDBTitle: crystal structure of the 5'->3' exoribonuclease xrn1, e178q mutant in2 complex with manganese


Added to library: Sat Feb 12 08:56:58 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence IPKFFHFISERWPQISQLIDGSQIPEFDNLYLDMNSILHNCTHGRLSEEEVYSKIFSYIDHLFHTIKPKQ
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Known secondary structure (DSSP)
TTTTSTT
SSS










 .........80.........90.........100.........110.........120.........130.........140
Sequence TFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAFDSNAITPGTEFMAKLTENLKYFIHDKITNDTRW
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Known secondary structure (DSSP)


S

GGGTTT


GGG
STT

SGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence QNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTTL
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Known secondary structure (DSSP) GGS
TTS
S
STT

TT


S
TTT

SS



T
 .........220.........230.........240.........250.........260.........270.........280
Sequence ETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLKKGAFPVLL
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Known secondary structure (DSSP) TTS
GGG
SSS
SS




SSS


TT

GGGT
 .........290.........300.........310.........320.........330.........340.........350
Sequence QTFKEALQHMDGYINEQGKINLARFSIWLKYLSDFEYLNFEKKDIDVEWFNQQLENISLEGERKRTRMGK
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Known secondary structure (DSSP) TTS
SS
STT





TTTTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence KLLMKQQKKLIGAVKPWLLKTVQRKVTSDADFEIFPLEDKELVRANLDFLKEFAFDLGLILAHSKSKDLY
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Known secondary structure (DSSP) TTS




TTS

S
TTTTTT


TTS

 .........430.........440.........450.........460.........470.........480.........490
Sequence YFKLDLDSIXXXXXXXXXXXXXXXXXXXYSERFVEWKDQYYKDKDTDSLKEMTENYVGGLQWVLYYYYRG
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Known secondary structure (DSSP)



S



S
TTTTT





SST
 .........500.........510.........520.........530.........540.........550.........560
Sequence CPSWSWYYRYHYAPRISDVIKGIDQNIEFHKGQPFKPFQQLMAVLPERSKNLIPVVYFYPNEVVKISFVD
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Known secondary structure (DSSP)


SS




SS


TTTGGGGSSS










SS
TTSGGGTTS














 .........570.........580.........590.........600.........610.........620.........630
Sequence QKRLVEAMAPYDAKLSPDEKKRNSFGTDLIFIFNPQVDTVYKTPLAGLFNDIEHNHCIEREFIPESMENV
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Known secondary structure (DSSP) STTGGGS

TTTS




TT



B

SS
TT


B
TT






SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence KFLFGLPKGAKLGASSLAGFPSLKTLPLTAELAYNSSVVFNFPSKQQSMVLHIQDLYSLSDLAKRHMGKI
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Known secondary structure (DSSP)



S

TT


GGG

TT


GGGS





SSSS

SS





TTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence VYSRWPFLRESKLLSLITEETVYEGVKSGKLTKVIERKPQDFERKEFRELKMTLKSNYQRTKAILLDDIS
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Known secondary structure (DSSP) SGGG

SS

SSS




S


 .........780.........790.........800.........810.........820.........830.........840
Sequence ALAKVVPVNGLVRNSDGSYSKSFNETIEYYPLQLIVEDVKNKDERYIEKEPLPINKEFPKGSKVVFLGDY
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Known secondary structure (DSSP)

TTS

SS
GGG
B


SS

GGGS
B



S
TT

SGG
 .........850.........860.........870.........880.........890.........900.........910
Sequence AYGGEATVDGYNSETRLKLTVKKGSLRAEPNIGKVRAKLDSQALRFYPVVSLESDSLTKASMAAVESEII
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Known secondary structure (DSSP) GTTSSSS
B


S



TTS






SS


TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence KYVSLPDSSEQKKLAKVPREAILNAESSYVLLRSQRFHLGDRVMYIQDSGKVPLHSKGTVVGYTSIGKNV
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Known secondary structure (DSSP) S



B



GGG
GGGGTS


TT


SSSSS
TT


SSS
 .........990.........1000.........1010.........1020...
Sequence SIQVLFDNEIIAGNNFGGRLQTRRGLGLDSSFLLNLSDRQLVY
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Known secondary structure (DSSP) SS

TT
B
TTTT
SSS
GGGSSS

S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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