Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	F	F	K	K	T	A	L	A	A	L	V	M	G	F	S	G	A	A	L	A	L	P	N	I	T	I	L	A	T	G	G	T	I	A	G	G	G	D	S	A	T	K	S	N	Y	T	V	G	K	V	G	V	E	N	L	V	N	A
Secondary structure
SS confidence
Disorder		?	?												?	?	?	?	?	?		?																	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	P	Q	L	K	D	I	A	N	V	K	G	E	Q	V	V	N	I	G	S	Q	D	M	N	D	N	V	W	L	T	L	A	K	K	I	N	T	D	C	D	K	T	D	G	F	V	I	T	H	G	T	D	T	M	E	E	T	A	Y	F
Secondary structure
SS confidence
Disorder																		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	D	L	T	V	K	C	D	K	P	V	V	M	V	G	A	M	R	P	S	T	S	M	S	A	D	G	P	F	N	L	Y	N	A	V	V	T	A	A	D	K	A	S	A	N	R	G	V	L	V	V	M	N	D	T	V	L	D	G	R
Secondary structure
SS confidence
Disorder																			?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	V	T	K	T	N	T	T	D	V	A	T	F	K	S	V	N	Y	G	P	L	G	Y	I	H	N	G	K	I	D	Y	Q	R	T	P	A	R	K	H	T	S	D	T	P	F	D	V	S	K	L	N	E	L	P	K	V	G	I	V	Y
Secondary structure
SS confidence
Disorder																																					?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		N	Y	A	N	A	S	D	L	P	A	K	A	L	V	D	A	G	Y	D	G	I	V	S	A	G	V	G	N	G	N	L	Y	K	S	V	F	D	T	L	A	T	A	A	K	T	G	T	A	V	V	R	S	S	R	V	P	T	G	A	T
Secondary structure
SS confidence
Disorder																																																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Sequence		T	Q	D	A	E	V	D	D	A	K	Y	G	F	V	A	S	G	T	L	N	P	Q	K	A	R	V	L	L	Q	L	A	L	T	Q	T	K	D	P	Q	Q	I	Q	Q	I	F	N	Q	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																										?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1nns chain A Region: 23 - 348 Aligned: 326 Modelled: 326 Confidence: 100.0% Identity: 100% Fold: Glutaminase/Asparaginase Superfamily: Glutaminase/Asparaginase Family: Glutaminase/Asparaginase Phyre2 PDB 1wsa chain A Region: 24 - 348 Aligned: 316 Modelled: 325 Confidence: 100.0% Identity: 57% Fold: Glutaminase/Asparaginase Superfamily: Glutaminase/Asparaginase Family: Glutaminase/Asparaginase Phyre2 PDB 1o7j chain A Region: 23 - 348 Aligned: 321 Modelled: 326 Confidence: 100.0% Identity: 48% Fold: Glutaminase/Asparaginase Superfamily: Glutaminase/Asparaginase Family: Glutaminase/Asparaginase Phyre2 PDB 2wlt chain A Region: 23 - 348 Aligned: 323 Modelled: 326 Confidence: 100.0% Identity: 51% PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: the crystal structure of helicobacter pylori l-asparaginase2 at 1.4 a resolution Phyre2 PDB 4pga chain A Region: 23 - 348 Aligned: 325 Modelled: 326 Confidence: 100.0% Identity: 48% Fold: Glutaminase/Asparaginase Superfamily: Glutaminase/Asparaginase Family: Glutaminase/Asparaginase Phyre2 PDB 1agx chain A Region: 24 - 348 Aligned: 324 Modelled: 325 Confidence: 100.0% Identity: 46% Fold: Glutaminase/Asparaginase Superfamily: Glutaminase/Asparaginase Family: Glutaminase/Asparaginase Phyre2 PDB 2d6f chain A Region: 17 - 347 Aligned: 324 Modelled: 331 Confidence: 100.0% Identity: 30% PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) Phyre2 PDB 1zq1 chain B Region: 22 - 347 Aligned: 323 Modelled: 315 Confidence: 100.0% Identity: 29% PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi Phyre2 PDB 1zq1 chain A domain 2 Region: 19 - 347 Aligned: 326 Modelled: 325 Confidence: 100.0% Identity: 29% Fold: Glutaminase/Asparaginase Superfamily: Glutaminase/Asparaginase Family: Glutaminase/Asparaginase Phyre2 PDB 3nxk chain E Region: 24 - 348 Aligned: 311 Modelled: 313 Confidence: 100.0% Identity: 52% PDB header:hydrolase Chain: E: PDB Molecule:cytoplasmic l-asparaginase; PDBTitle: crystal structure of probable cytoplasmic l-asparaginase from2 campylobacter jejuni Phyre2 PDB 2d6f chain A domain 2 Region: 17 - 347 Aligned: 327 Modelled: 331 Confidence: 100.0% Identity: 28% Fold: Glutaminase/Asparaginase Superfamily: Glutaminase/Asparaginase Family: Glutaminase/Asparaginase Phyre2 PDB 2ocd chain A domain 1 Region: 24 - 347 Aligned: 312 Modelled: 318 Confidence: 100.0% Identity: 24% Fold: Glutaminase/Asparaginase Superfamily: Glutaminase/Asparaginase Family: Glutaminase/Asparaginase Phyre2 PDB 1wnf chain A Region: 25 - 347 Aligned: 309 Modelled: 319 Confidence: 100.0% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: crystal structure of ph0066 from pyrococcus horikoshii Phyre2 PDB 3oa0 chain B Region: 23 - 184 Aligned: 131 Modelled: 144 Confidence: 94.1% Identity: 11% PDB header:oxidoreductase Chain: B: PDB Molecule:lipopolysaccaride biosynthesis protein wbpb; PDBTitle: crystal structure of the wlba (wbpb) dehydrogenase from thermus2 thermophilus in complex with nad and udp-glcnaca Phyre2 PDB 1uqr chain A Region: 23 - 132 Aligned: 97 Modelled: 110 Confidence: 92.2% Identity: 15% Fold: Flavodoxin-like Superfamily: Type II 3-dehydroquinate dehydratase Family: Type II 3-dehydroquinate dehydratase Phyre2 PDB 1gqo chain A Region: 24 - 132 Aligned: 96 Modelled: 109 Confidence: 89.6% Identity: 18% Fold: Flavodoxin-like Superfamily: Type II 3-dehydroquinate dehydratase Family: Type II 3-dehydroquinate dehydratase Phyre2 PDB 2csu chain A domain 3 Region: 24 - 134 Aligned: 108 Modelled: 110 Confidence: 81.2% Identity: 12% Fold: Flavodoxin-like Superfamily: Succinyl-CoA synthetase domains Family: Succinyl-CoA synthetase domains Phyre2 PDB 1zxx chain A Region: 23 - 160 Aligned: 130 Modelled: 136 Confidence: 81.2% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:6-phosphofructokinase; PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii Phyre2 PDB 3qvj chain B Region: 22 - 132 Aligned: 88 Modelled: 94 Confidence: 78.8% Identity: 17% PDB header:isomerase Chain: B: PDB Molecule:putative hydantoin racemase; PDBTitle: allantoin racemase from klebsiella pneumoniae Phyre2 PDB 1fui chain A domain 2 Region: 19 - 156 Aligned: 128 Modelled: 138 Confidence: 78.6% Identity: 11% Fold: FucI/AraA N-terminal and middle domains Superfamily: FucI/AraA N-terminal and middle domains Family: L-fucose isomerase, N-terminal and second domains Phyre2 1 d1nnsa_ 2 d1wsaa_ 3 d1o7ja_ 4 c2wltA_ 5 d4pgaa_ 6 d1agxa_ 7 c2d6fA_ 8 c1zq1B_ 9 d1zq1a2 10 c3nxkE_ 11 d2d6fa2 12 d2ocda1 13 c1wnfA_ 14 c3oa0B_ 15 d1uqra_ 16 d1gqoa_ 17 d2csua3 18 c1zxxA_ 19 c3qvjB_ 20 d1fuia2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1nnsa_ 100.0 100 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 2 d1wsaa_ 100.0 57 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 3 d1o7ja_ 100.0 48 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 4 c2wltA_ 100.0 51 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: the crystal structure of helicobacter pylori l-asparaginase2 at 1.4 a resolution 5 d4pgaa_ 100.0 48 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 6 d1agxa_ 100.0 46 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 7 c2d6fA_ 100.0 30 PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) 8 c1zq1B_ 100.0 29 PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi 9 d1zq1a2 100.0 29 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 10 c3nxkE_ 100.0 52 PDB header:hydrolase Chain: E: PDB Molecule:cytoplasmic l-asparaginase; PDBTitle: crystal structure of probable cytoplasmic l-asparaginase from2 campylobacter jejuni 11 d2d6fa2 100.0 28 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 12 d2ocda1 100.0 24 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 13 c1wnfA_ 100.0 25 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: crystal structure of ph0066 from pyrococcus horikoshii 14 c3oa0B_ 94.1 11 PDB header:oxidoreductase Chain: B: PDB Molecule:lipopolysaccaride biosynthesis protein wbpb; PDBTitle: crystal structure of the wlba (wbpb) dehydrogenase from thermus2 thermophilus in complex with nad and udp-glcnaca 15 d1uqra_ 92.2 15 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 16 d1gqoa_ 89.6 18 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 17 d2csua3 81.2 12 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 18 c1zxxA_ 81.2 15 PDB header:transferase Chain: A: PDB Molecule:6-phosphofructokinase; PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii 19 c3qvjB_ 78.8 17 PDB header:isomerase Chain: B: PDB Molecule:putative hydantoin racemase; PDBTitle: allantoin racemase from klebsiella pneumoniae 20 d1fuia2 78.6 11 Fold:FucI/AraA N-terminal and middle domains Superfamily:FucI/AraA N-terminal and middle domains Family:L-fucose isomerase, N-terminal and second domains 21 d1q7ra_ not modelled 76.3 24 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 22 d2csua1 not modelled 74.6 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 23 c3k2qA_ not modelled 74.4 15 PDB header:transferase Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase; PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88 24 c2obnA_ not modelled 72.3 19 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a duf1611 family protein (ava_3511) from anabaena2 variabilis atcc 29413 at 2.30 a resolution 25 d2ftsa3 not modelled 70.7 16 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 26 d1s2da_ not modelled 70.6 18 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 27 c2rjoA_ not modelled 69.6 18 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans 28 d1wu2a3 not modelled 68.9 15 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 29 d1dxya2 not modelled 67.9 12 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 30 c3o8oC_ not modelled 65.1 17 PDB header:transferase Chain: C: PDB Molecule:6-phosphofructokinase subunit alpha; PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae 31 c3lloA_ not modelled 63.5 15 PDB header:motor protein Chain: A: PDB Molecule:prestin; PDBTitle: crystal structure of the stas domain of motor protein prestin (anion2 transporter slc26a5) 32 c3shoA_ not modelled 63.3 11 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain) 33 d1uz5a3 not modelled 62.7 23 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 34 c3lwzC_ not modelled 60.8 17 PDB header:lyase Chain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis 35 d1tuba1 not modelled 60.7 14 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 36 c3o1hB_ not modelled 58.9 4 PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao 37 d2nv0a1 not modelled 55.8 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 38 c2zskA_ not modelled 55.6 17 PDB header:unknown function Chain: A: PDB Molecule:226aa long hypothetical aspartate racemase; PDBTitle: crystal structure of ph1733, an aspartate racemase2 homologue, from pyrococcus horikoshii ot3 39 d1ls1a2 not modelled 54.5 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 40 c1uz5A_ not modelled 53.9 22 PDB header:molybdopterin biosynthesis Chain: A: PDB Molecule:402aa long hypothetical molybdopterin PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii 41 d1vm6a3 not modelled 53.7 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 42 c2htmB_ not modelled 53.5 22 PDB header:biosynthetic protein Chain: B: PDB Molecule:thiazole biosynthesis protein thig; PDBTitle: crystal structure of ttha0676 from thermus thermophilus hb8 43 c2issF_ not modelled 52.8 22 PDB header:lyase, transferase Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima 44 d1diha1 not modelled 52.3 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 45 c2cdh1_ not modelled 51.2 20 PDB header:transferase Chain: 1: PDB Molecule:enoyl reductase; PDBTitle: architecture of the thermomyces lanuginosus fungal fatty2 acid synthase at 5 angstrom resolution. 46 c3bezC_ not modelled 48.8 22 PDB header:hydrolase Chain: C: PDB Molecule:protease 4; PDBTitle: crystal structure of escherichia coli signal peptide peptidase (sppa),2 semet crystals 47 c3bioB_ not modelled 47.3 17 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of oxidoreductase (gfo/idh/moca family member) from2 porphyromonas gingivalis w83 48 c1keeH_ not modelled 47.0 20 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 49 c3gpiA_ not modelled 46.2 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: structure of putative nad-dependent epimerase/dehydratase2 from methylobacillus flagellatus 50 c3h75A_ not modelled 45.5 13 PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens 51 d2nqra3 not modelled 44.9 12 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 52 d1wzua1 not modelled 44.8 39 Fold:NadA-like Superfamily:NadA-like Family:NadA-like 53 c2h2wA_ not modelled 44.6 17 PDB header:transferase Chain: A: PDB Molecule:homoserine o-succinyltransferase; PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution 54 c3g1wB_ not modelled 43.6 17 PDB header:transport protein Chain: B: PDB Molecule:sugar abc transporter; PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans 55 d2f48a1 not modelled 43.1 11 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 56 c3d54D_ not modelled 42.5 25 PDB header:ligase Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1; PDBTitle: stucture of purlqs from thermotoga maritima 57 c2x7xA_ not modelled 41.9 16 PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: fructose binding periplasmic domain of hybrid two component2 system bt1754 58 c2qs0A_ not modelled 41.9 39 PDB header:biosynthetic protein Chain: A: PDB Molecule:quinolinate synthetase a; PDBTitle: quinolinate synthase from pyrococcus furiosus 59 d2d59a1 not modelled 41.7 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 60 d1gtza_ not modelled 41.3 18 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 61 d1ka9h_ not modelled 41.3 24 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 62 d8abpa_ not modelled 41.2 19 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 63 d1vcoa1 not modelled 41.2 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 64 c3s40C_ not modelled 40.7 13 PDB header:transferase Chain: C: PDB Molecule:diacylglycerol kinase; PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne 65 c3brsA_ not modelled 39.3 11 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans 66 c3ffsC_ not modelled 39.2 19 PDB header:oxidoreductase Chain: C: PDB Molecule:inosine-5-monophosphate dehydrogenase; PDBTitle: the crystal structure of cryptosporidium parvum inosine-5'-2 monophosphate dehydrogenase 67 d1iuka_ not modelled 38.3 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 68 d1k9vf_ not modelled 37.9 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 69 d2g0ta1 not modelled 37.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 70 c1jcnA_ not modelled 37.5 20 PDB header:oxidoreductase Chain: A: PDB Molecule:inosine monophosphate dehydrogenase i; PDBTitle: binary complex of human type-i inosine monophosphate dehydrogenase2 with 6-cl-imp 71 d1tb3a1 not modelled 37.4 22 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 72 d1vmaa2 not modelled 36.9 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 73 d1ezra_ not modelled 36.9 12 Fold:Nucleoside hydrolase Superfamily:Nucleoside hydrolase Family:Nucleoside hydrolase 74 c2yv2A_ not modelled 36.5 20 PDB header:ligase Chain: A: PDB Molecule:succinyl-coa synthetase alpha chain; PDBTitle: crystal structure of succinyl-coa synthetase alpha chain from2 aeropyrum pernix k1 75 d1gpma2 not modelled 36.2 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 76 c2ad5B_ not modelled 35.9 24 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution. 77 c3niwA_ not modelled 35.7 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:haloacid dehalogenase-like hydrolase; PDBTitle: crystal structure of a haloacid dehalogenase-like hydrolase from2 bacteroides thetaiotaomicron 78 d2a9va1 not modelled 35.3 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 79 c3opyG_ not modelled 35.2 18 PDB header:transferase Chain: G: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 80 d1u9ca_ not modelled 35.1 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 81 d1i1qb_ not modelled 34.8 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 82 c3nvaB_ not modelled 34.7 15 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus 83 c2e2kC_ not modelled 34.4 10 PDB header:hydrolase Chain: C: PDB Molecule:formamidase; PDBTitle: helicobacter pylori formamidase amif contains a fine-tuned cysteine-2 glutamate-lysine catalytic triad 84 c1powA_ not modelled 34.3 13 PDB header:oxidoreductase(oxygen as acceptor) Chain: A: PDB Molecule:pyruvate oxidase; PDBTitle: the refined structures of a stabilized mutant and of wild-type2 pyruvate oxidase from lactobacillus plantarum 85 c3fkjA_ not modelled 34.0 16 PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerases; PDBTitle: crystal structure of a putative phosphosugar isomerase (stm_0572) from2 salmonella typhimurium lt2 at 2.12 a resolution 86 c2i55C_ not modelled 33.9 12 PDB header:isomerase Chain: C: PDB Molecule:phosphomannomutase; PDBTitle: complex of glucose-1,6-bisphosphate with phosphomannomutase from2 leishmania mexicana 87 d1wl8a1 not modelled 33.5 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 88 c3dnpA_ not modelled 33.4 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:stress response protein yhax; PDBTitle: crystal structure of stress response protein yhax from bacillus2 subtilis 89 d2btoa1 not modelled 33.4 16 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 90 c3fz0C_ not modelled 33.3 11 PDB header:hydrolase Chain: C: PDB Molecule:nucleoside hydrolase, putative; PDBTitle: inosine-guanosine nucleoside hydrolase (ig-nh) 91 c2v3cC_ not modelled 32.9 17 PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii 92 d1pkla3 not modelled 32.6 10 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 93 d1tjya_ not modelled 31.8 19 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 94 c2qyhD_ not modelled 31.0 15 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical conserved protein, gk1056; PDBTitle: crystal structure of the hypothetical protein (gk1056) from2 geobacillus kaustophilus hta426 95 c3gidB_ not modelled 31.0 14 PDB header:ligase Chain: B: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: the biotin carboxylase (bc) domain of human acetyl-coa2 carboxylase 2 (acc2) in complex with soraphen a 96 d1h05a_ not modelled 30.7 17 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 97 d2rbka1 not modelled 30.4 15 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 98 c3n8kG_ not modelled 30.1 17 PDB header:lyase Chain: G: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: type ii dehydroquinase from mycobacterium tuberculosis complexed with2 citrazinic acid 99 d1r61a_ not modelled 30.1 17 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Putative cyclase Family:Putative cyclase 100 d2nu7b1 not modelled 29.9 16 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 101 d1q8fa_ not modelled 29.6 15 Fold:Nucleoside hydrolase Superfamily:Nucleoside hydrolase Family:Nucleoside hydrolase 102 d1t3ta2 not modelled 29.5 34 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 103 c3fzqA_ not modelled 29.4 15 PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of putative haloacid dehalogenase-like hydrolase2 (yp_001086940.1) from clostridium difficile 630 at 2.10 a resolution 104 d1r6va_ not modelled 29.4 16 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 105 d2fuea1 not modelled 29.3 12 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 106 c1xviA_ not modelled 29.2 11 PDB header:hydrolase Chain: A: PDB Molecule:putative mannosyl-3-phosphoglycerate phosphatase; PDBTitle: crystal structure of yedp, phosphatase-like domain protein2 from escherichia coli k12 107 d1xvia_ not modelled 29.2 11 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 108 c3b9qA_ not modelled 29.1 13 PDB header:protein transport Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana 109 c3kd9B_ not modelled 29.1 27 PDB header:oxidoreductase Chain: B: PDB Molecule:coenzyme a disulfide reductase; PDBTitle: crystal structure of pyridine nucleotide disulfide oxidoreductase from2 pyrococcus horikoshii 110 d1em9a_ not modelled 28.8 14 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 111 c2btqB_ not modelled 28.6 16 PDB header:structural protein Chain: B: PDB Molecule:tubulin btubb; PDBTitle: structure of btubab heterodimer from prosthecobacter2 dejongeii 112 d1tubb1 not modelled 28.3 16 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 113 c3e96B_ not modelled 28.3 15 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 bacillus clausii 114 c2hmcA_ not modelled 28.3 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: the crystal structure of dihydrodipicolinate synthase dapa from2 agrobacterium tumefaciens 115 c2rduA_ not modelled 28.3 22 PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxyacid oxidase 1; PDBTitle: crystal structure of human glycolate oxidase in complex with2 glyoxylate 116 d1d1da2 not modelled 28.3 14 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 117 d1y81a1 not modelled 28.2 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 118 d1goxa_ not modelled 28.1 24 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 119 c2e77B_ not modelled 28.1 22 PDB header:oxidoreductase Chain: B: PDB Molecule:lactate oxidase; PDBTitle: crystal structure of l-lactate oxidase with pyruvate complex 120 c2p4nB_ not modelled 27.9 15 PDB header:transport protein Chain: B: PDB Molecule:tubulin beta chain; PDBTitle: human monomeric kinesin (1bg2) and bovine tubulin (1jff)2 docked into the 9-angstrom cryo-em map of nucleotide-free3 kinesin complexed to the microtubule

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0