PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3brsA_

Fold library id	PDB Header	Molecule	Title
c3brsA_	PDB header: transport protein	Chain: A: PDB Molecule: periplasmic binding protein/laci transcriptional	PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans

Links to external resources
Added to library: Tue Mar 16 12:16:02 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q Y Y M I C I P K V L D D S S D F W S V L V E G A Q M A A K E Y E I K L E F M A P E K E E D Y L V Q N E L I E E A I K R K P D V I L L A A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S T
S S T T
T
S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D Y E K T Y D A A K E I K D A G I K L I V I D S G M K Q D I A D I T V A T D N I Q A G I R I G A V T K N L V R K S G K I G V I S F V K N S K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T T G G G T
S S
S S
S
T S S S
S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T A M D R E E G L K I G L S D D S N K I E A I Y Y C D S N Y D K A Y D G T V E L L T K Y P D I S V M V G L N Q Y S A T G A A R A I K D M S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G G G
T T
T T S S T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 .

Sequence E A K V K L V C I D S S M E Q E G I F E A M V V Q K P F N I G Y L G V E K A L K L L K K E Y V P K Q L D S G C A L I T K D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S S
S
S
T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	Y	Y	M	I	C	I	P	K	V	L	D	D	S	S	D	F	W	S	V	L	V	E	G	A	Q	M	A	A	K	E	Y	E	I	K	L	E	F	M	A	P	E	K	E	E	D	Y	L	V	Q	N	E	L	I	E	E	A	I	K	R	K	P	D	V	I	L	L	A	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S				S	S	S																		T									S	S	T	T															T			S							S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	Y	E	K	T	Y	D	A	A	K	E	I	K	D	A	G	I	K	L	I	V	I	D	S	G	M	K	Q	D	I	A	D	I	T	V	A	T	D	N	I	Q	A	G	I	R	I	G	A	V	T	K	N	L	V	R	K	S	G	K	I	G	V	I	S	F	V	K	N	S	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T	T					T	T	T	G	G	G	T							S	S			S	S				S																						T	S	S	S								S		T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	A	M	D	R	E	E	G	L	K	I	G	L	S	D	D	S	N	K	I	E	A	I	Y	Y	C	D	S	N	Y	D	K	A	Y	D	G	T	V	E	L	L	T	K	Y	P	D	I	S	V	M	V	G	L	N	Q	Y	S	A	T	G	A	A	R	A	I	K	D	M	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														G	G	G	G	G	G								T	T																	T	T							S	S														T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Sequence	E	A	K	V	K	L	V	C	I	D	S	S	M	E	Q	E	G	I	F	E	A	M	V	V	Q	K	P	F	N	I	G	Y	L	G	V	E	K	A	L	K	L	L	K	K	E	Y	V	P	K	Q	L	D	S	G	C	A	L	I	T	K	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	S							S		S					S																										T					S