PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3d54D_

Fold library id	PDB Header	Molecule	Title
c3d54D_	PDB header: ligase	Chain: D: PDB Molecule: phosphoribosylformylglycinamidine synthase 1;	PDBTitle: stucture of purlqs from thermotoga maritima

Links to external resources
Added to library: Tue Mar 16 13:46:00 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K P R A C V V V Y P G S N C D R D A Y H A L E I N G F E P S Y V G L D D K L D D Y E L I I L P G G F S Y G D Y L R P G A V A A R E K I A F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T
T T
S S
S
G G G G
S S T T T S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E I A K A A E R G K L I M G I N G F Q I L I E M G L L K G A L L Q N S S G K F I C K W V D L I V E N N D T P F T N A F E K G E K I R I P I A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T S S
S
S S S S
B
S S T T S T T S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H G F G R Y V K I D D V N V V L R Y V K D V N G S D E R I A G V L N E S G N V F G L M P H P E R A V E E L I G G E D G K K V F Q S I L N Y L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B S S
S S
S S
S S
G G G
S S S
S
S T T T T S T T T T
S T T S

.

Sequence K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	P	R	A	C	V	V	V	Y	P	G	S	N	C	D	R	D	A	Y	H	A	L	E	I	N	G	F	E	P	S	Y	V	G	L	D	D	K	L	D	D	Y	E	L	I	I	L	P	G	G	F	S	Y	G	D	Y	L	R	P	G	A	V	A	A	R	E	K	I	A	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T													T	T	T								T	T				S	S		S									G	G	G	G		S	S	T	T					T	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	I	A	K	A	A	E	R	G	K	L	I	M	G	I	N	G	F	Q	I	L	I	E	M	G	L	L	K	G	A	L	L	Q	N	S	S	G	K	F	I	C	K	W	V	D	L	I	V	E	N	N	D	T	P	F	T	N	A	F	E	K	G	E	K	I	R	I	P	I	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T																T	S	S		S						S	S	S	S		B												S	S	T	T	S	T	T	S		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	G	F	G	R	Y	V	K	I	D	D	V	N	V	V	L	R	Y	V	K	D	V	N	G	S	D	E	R	I	A	G	V	L	N	E	S	G	N	V	F	G	L	M	P	H	P	E	R	A	V	E	E	L	I	G	G	E	D	G	K	K	V	F	Q	S	I	L	N	Y	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B	S	S						S	S									S	S		S	S			G	G	G							S	S	S							S		S	T	T	T	T	S	T	T	T	T		S	T	T	S
	.
Sequence	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)