1 c2owoA_
100.0
23
PDB header: ligase/dnaChain: A: PDB Molecule: dna ligase;PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate
2 c1v9pB_
100.0
23
PDB header: ligaseChain: B: PDB Molecule: dna ligase;PDBTitle: crystal structure of nad+-dependent dna ligase
3 c1dgsB_
100.0
22
PDB header: ligaseChain: B: PDB Molecule: dna ligase;PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis
4 c3pn1A_
100.0
25
PDB header: ligase/ligase inhibitorChain: A: PDB Molecule: dna ligase;PDBTitle: novel bacterial nad+-dependent dna ligase inhibitors with broad2 spectrum potency and antibacterial efficacy in vivo
5 d1b04a_
100.0
25
Fold: ATP-graspSuperfamily: DNA ligase/mRNA capping enzyme, catalytic domainFamily: Adenylation domain of NAD+-dependent DNA ligase6 d1ta8a_
100.0
24
Fold: ATP-graspSuperfamily: DNA ligase/mRNA capping enzyme, catalytic domainFamily: Adenylation domain of NAD+-dependent DNA ligase7 c3jslA_
100.0
26
PDB header: ligaseChain: A: PDB Molecule: dna ligase;PDBTitle: crystal structure of the adenylation domain of nad+-2 dependent dna ligase from staphylococcus aureus
8 d1v9pa3
100.0
25
Fold: ATP-graspSuperfamily: DNA ligase/mRNA capping enzyme, catalytic domainFamily: Adenylation domain of NAD+-dependent DNA ligase9 c1zauA_
100.0
23
PDB header: ligaseChain: A: PDB Molecule: dna ligase;PDBTitle: adenylation domain of nad+ dependent dna ligase from2 m.tuberculosis
10 d1dgsa3
100.0
24
Fold: ATP-graspSuperfamily: DNA ligase/mRNA capping enzyme, catalytic domainFamily: Adenylation domain of NAD+-dependent DNA ligase11 c3bacA_
100.0
24
PDB header: ligaseChain: A: PDB Molecule: dna ligase;PDBTitle: structural basis for the inhibition of bacterial nad+2 dependent dna ligase
12 d1dgsa1
100.0
15
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: NAD+-dependent DNA ligase, domain 313 d1dgsa2
100.0
28
Fold: OB-foldSuperfamily: Nucleic acid-binding proteinsFamily: DNA ligase/mRNA capping enzyme postcatalytic domain14 d1x9na3
99.6
15
Fold: ATP-graspSuperfamily: DNA ligase/mRNA capping enzyme, catalytic domainFamily: ATP-dependent DNA ligase catalytic domain15 d2a1jb1
99.0
14
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: Hef domain-like16 c2hivA_
98.9
18
PDB header: ligaseChain: A: PDB Molecule: thermostable dna ligase;PDBTitle: atp-dependent dna ligase from s. solfataricus
17 c3gdeA_
98.9
20
PDB header: ligaseChain: A: PDB Molecule: dna ligase;PDBTitle: the closed conformation of atp-dependent dna ligase from2 archaeoglobus fulgidus
18 c2vugB_
98.8
23
PDB header: ligaseChain: B: PDB Molecule: pab1020;PDBTitle: the structure of an archaeal homodimeric rna ligase
19 c3l2pA_
98.8
13
PDB header: ligase/dnaChain: A: PDB Molecule: dna ligase 3;PDBTitle: human dna ligase iii recognizes dna ends by dynamic switching between2 two dna bound states
20 d1x2ia1
98.7
14
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: Hef domain-like21 c2cfmA_
not modelled
98.6
14
PDB header: ligaseChain: A: PDB Molecule: thermostable dna ligase;PDBTitle: atp-dependent dna ligase from pyrococcus furiosus
22 c1x9nA_
not modelled
98.6
16
PDB header: ligase/dnaChain: A: PDB Molecule: dna ligase i;PDBTitle: crystal structure of human dna ligase i bound to 5'-adenylated, nicked2 dna
23 d2bgwa1
not modelled
98.6
16
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: Hef domain-like24 c3qwuA_
not modelled
98.3
13
PDB header: ligaseChain: A: PDB Molecule: dna ligase;PDBTitle: putative atp-dependent dna ligase from aquifex aeolicus.
25 c1p8lA_
not modelled
98.3
15
PDB header: ligaseChain: A: PDB Molecule: pbcv-1 dna ligase;PDBTitle: new crystal structure of chlorella virus dna ligase-adenylate
26 c1a0iA_
not modelled
98.1
16
PDB header: ligaseChain: A: PDB Molecule: dna ligase;PDBTitle: atp-dependent dna ligase from bacteriophage t7 complex with2 atp
27 d1kfta_
not modelled
98.1
15
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: Excinuclease UvrC C-terminal domain28 c1kftA_
not modelled
98.1
15
PDB header: dna binding proteinChain: A: PDB Molecule: excinuclease abc subunit c;PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli
29 d1fvia2
not modelled
98.0
14
Fold: ATP-graspSuperfamily: DNA ligase/mRNA capping enzyme, catalytic domainFamily: ATP-dependent DNA ligase catalytic domain30 c1vs0A_
not modelled
97.8
22
PDB header: ligaseChain: A: PDB Molecule: putative dna ligase-like protein rv0938/mt0965;PDBTitle: crystal structure of the ligase domain from m. tuberculosis ligd at2 2.4a
31 c2nrzB_
not modelled
97.7
16
PDB header: hydrolaseChain: B: PDB Molecule: uvrabc system protein c;PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation
32 c3c1zA_
not modelled
97.7
15
PDB header: dna binding proteinChain: A: PDB Molecule: dna integrity scanning protein disa;PDBTitle: structure of the ligand-free form of a bacterial dna damage2 sensor protein
33 d2i1qa1
not modelled
97.6
17
Fold: SAM domain-likeSuperfamily: Rad51 N-terminal domain-likeFamily: DNA repair protein Rad51, N-terminal domain34 d1szpa1
not modelled
97.6
19
Fold: SAM domain-likeSuperfamily: Rad51 N-terminal domain-likeFamily: DNA repair protein Rad51, N-terminal domain35 c2bhnD_
not modelled
97.6
18
PDB header: hydrolaseChain: D: PDB Molecule: xpf endonuclease;PDBTitle: xpf from aeropyrum pernix
36 d1a0ia2
not modelled
97.6
14
Fold: ATP-graspSuperfamily: DNA ligase/mRNA capping enzyme, catalytic domainFamily: ATP-dependent DNA ligase catalytic domain37 d1pzna1
not modelled
97.5
17
Fold: SAM domain-likeSuperfamily: Rad51 N-terminal domain-likeFamily: DNA repair protein Rad51, N-terminal domain38 c1b22A_
not modelled
97.5
20
PDB header: dna binding proteinChain: A: PDB Molecule: dna repair protein rad51;PDBTitle: rad51 (n-terminal domain)
39 d1b22a_
not modelled
97.5
20
Fold: SAM domain-likeSuperfamily: Rad51 N-terminal domain-likeFamily: DNA repair protein Rad51, N-terminal domain40 d1ckma2
not modelled
97.3
14
Fold: ATP-graspSuperfamily: DNA ligase/mRNA capping enzyme, catalytic domainFamily: mRNA capping enzyme41 d2aq0a1
not modelled
97.3
10
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: Hef domain-like42 c3kyhC_
not modelled
97.1
19
PDB header: protein bindingChain: C: PDB Molecule: mrna-capping enzyme subunit alpha;PDBTitle: saccharomyces cerevisiae cet1-ceg1 capping apparatus
43 c1p16A_
not modelled
96.9
17
PDB header: transferaseChain: A: PDB Molecule: mrna capping enzyme alpha subunit;PDBTitle: structure of an mrna capping enzyme bound to the2 phosphorylated carboxyl-terminal domain of rna polymerase3 ii
44 c1cknA_
not modelled
96.9
16
PDB header: capping enzymeChain: A: PDB Molecule: mrna capping enzyme;PDBTitle: structure of guanylylated mrna capping enzyme complexed2 with gtp
45 d1szpb1
not modelled
96.8
19
Fold: SAM domain-likeSuperfamily: Rad51 N-terminal domain-likeFamily: DNA repair protein Rad51, N-terminal domain46 c3s24F_
not modelled
96.5
16
PDB header: hydrolase, transferaseChain: F: PDB Molecule: mrna-capping enzyme;PDBTitle: crystal structure of human mrna guanylyltransferase
47 d1p16a2
not modelled
96.5
18
Fold: ATP-graspSuperfamily: DNA ligase/mRNA capping enzyme, catalytic domainFamily: mRNA capping enzyme48 c2w9mB_
not modelled
96.5
16
PDB header: dna replicationChain: B: PDB Molecule: polymerase x;PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans
49 c2csdB_
not modelled
96.1
16
PDB header: isomeraseChain: B: PDB Molecule: topoisomerase v;PDBTitle: crystal structure of topoisomerase v (61 kda fragment)
50 d1pu6a_
not modelled
96.0
18
Fold: DNA-glycosylaseSuperfamily: DNA-glycosylaseFamily: 3-Methyladenine DNA glycosylase III (MagIII)51 d1doqa_
not modelled
95.6
20
Fold: SAM domain-likeSuperfamily: C-terminal domain of RNA polymerase alpha subunitFamily: C-terminal domain of RNA polymerase alpha subunit52 d1lb2b_
not modelled
95.6
14
Fold: SAM domain-likeSuperfamily: C-terminal domain of RNA polymerase alpha subunitFamily: C-terminal domain of RNA polymerase alpha subunit53 d1z3eb1
not modelled
95.3
6
Fold: SAM domain-likeSuperfamily: C-terminal domain of RNA polymerase alpha subunitFamily: C-terminal domain of RNA polymerase alpha subunit54 d1cooa_
not modelled
95.2
14
Fold: SAM domain-likeSuperfamily: C-terminal domain of RNA polymerase alpha subunitFamily: C-terminal domain of RNA polymerase alpha subunit55 d2p6ra2
not modelled
94.8
10
Fold: Sec63 N-terminal domain-likeSuperfamily: Sec63 N-terminal domain-likeFamily: Achaeal helicase C-terminal domain56 c3f10A_
not modelled
94.8
14
PDB header: hydrolase, lyaseChain: A: PDB Molecule: 8-oxoguanine-dna-glycosylase;PDBTitle: crystal structure of clostridium acetobutylicum 8-2 oxoguanine dna glycosylase in complex with 8-oxoguanosine
57 c2h5xA_
not modelled
94.8
13
PDB header: dna binding proteinChain: A: PDB Molecule: holliday junction atp-dependent dna helicase ruva;PDBTitle: ruva from mycobacterium tuberculosis
58 d1cuka2
not modelled
94.4
15
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: DNA helicase RuvA subunit, middle domain59 c2hvsA_
not modelled
94.3
15
PDB header: ligase/dna/rnaChain: A: PDB Molecule: t4 rna ligase 2;PDBTitle: structure of t4 rna ligase 2 with nicked 5'-adenylated2 nucleic acid duplex containing a 2'-deoxyribonucleotide at3 the nick
60 c1ixrA_
not modelled
94.2
13
PDB header: hydrolaseChain: A: PDB Molecule: holliday junction dna helicase ruva;PDBTitle: ruva-ruvb complex
61 c1s5lu_
not modelled
93.4
11
PDB header: photosynthesisChain: U: PDB Molecule: photosystem ii 12 kda extrinsic protein;PDBTitle: architecture of the photosynthetic oxygen evolving center
62 d1ixra1
not modelled
93.3
13
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: DNA helicase RuvA subunit, middle domain63 d3bzka1
not modelled
93.2
12
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: Tex HhH-containing domain-like64 d1s68a_
not modelled
93.0
15
Fold: ATP-graspSuperfamily: DNA ligase/mRNA capping enzyme, catalytic domainFamily: RNA ligase65 d1keaa_
not modelled
92.9
14
Fold: DNA-glycosylaseSuperfamily: DNA-glycosylaseFamily: Mismatch glycosylase66 c1rrqA_
not modelled
92.6
13
PDB header: hydrolase/dnaChain: A: PDB Molecule: muty;PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair
67 c1d8lA_
not modelled
92.5
17
PDB header: gene regulationChain: A: PDB Molecule: protein (holliday junction dna helicase ruva);PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii
68 d2abka_
not modelled
92.4
14
Fold: DNA-glycosylaseSuperfamily: DNA-glycosylaseFamily: Endonuclease III69 d2axtu1
not modelled
92.2
11
Fold: SAM domain-likeSuperfamily: PsbU/PolX domain-likeFamily: PsbU-like70 c2ihmA_
not modelled
92.2
11
PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase mu;PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide
71 c1ko9A_
not modelled
91.6
15
PDB header: hydrolaseChain: A: PDB Molecule: 8-oxoguanine dna glycosylase;PDBTitle: native structure of the human 8-oxoguanine dna glycosylase2 hogg1
72 d2noha1
not modelled
91.4
19
Fold: DNA-glycosylaseSuperfamily: DNA-glycosylaseFamily: DNA repair glycosylase, 2 C-terminal domains73 d2edua1
not modelled
91.1
17
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: ComEA-like74 c1kdhA_
not modelled
90.5
9
PDB header: transferase/dnaChain: A: PDB Molecule: terminal deoxynucleotidyltransferase shortPDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna
75 c2p6uA_
not modelled
90.2
11
PDB header: dna binding proteinChain: A: PDB Molecule: afuhel308 helicase;PDBTitle: apo structure of the hel308 superfamily 2 helicase
76 c1hjpA_
not modelled
90.2
17
PDB header: dna recombinationChain: A: PDB Molecule: ruva;PDBTitle: holliday junction binding protein ruva from e. coli
77 c2yg8B_
not modelled
90.2
22
PDB header: hydrolaseChain: B: PDB Molecule: dna-3-methyladenine glycosidase ii, putative;PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans
78 c1nomA_
not modelled
90.1
13
PDB header: nucleotidyltransferaseChain: A: PDB Molecule: dna polymerase beta;PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar)
79 d1rrqa1
not modelled
89.8
13
Fold: DNA-glycosylaseSuperfamily: DNA-glycosylaseFamily: Mismatch glycosylase80 d1kg2a_
not modelled
89.7
14
Fold: DNA-glycosylaseSuperfamily: DNA-glycosylaseFamily: Mismatch glycosylase81 c3s6iA_
not modelled
89.6
13
PDB header: hydrolase/dnaChain: A: PDB Molecule: dna-3-methyladenine glycosylase 1;PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna.
82 c1wcnA_
not modelled
89.2
16
PDB header: rna-binding proteinChain: A: PDB Molecule: transcription elongation protein nusa;PDBTitle: nmr structure of the carboxyterminal domains of escherichia2 coli nusa
83 c8iczA_
not modelled
89.1
7
PDB header: transferase/dnaChain: A: PDB Molecule: protein (dna polymerase beta (e.c.2.7.7.7));PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar)
84 d1bvsa2
not modelled
89.0
13
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: DNA helicase RuvA subunit, middle domain85 d2q0zx1
not modelled
88.5
12
Fold: Sec63 N-terminal domain-likeSuperfamily: Sec63 N-terminal domain-likeFamily: Sec63 N-terminal domain86 d1u9la_
not modelled
88.4
10
Fold: SAM domain-likeSuperfamily: Rad51 N-terminal domain-likeFamily: NusA extra C-terminal domains87 d2duya1
not modelled
88.2
30
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: ComEA-like88 c2va8A_
not modelled
87.9
13
PDB header: hydrolaseChain: A: PDB Molecule: ski2-type helicase;PDBTitle: dna repair helicase hel308
89 d1orna_
not modelled
87.5
14
Fold: DNA-glycosylaseSuperfamily: DNA-glycosylaseFamily: Endonuclease III90 d1ngna_
not modelled
86.3
13
Fold: DNA-glycosylaseSuperfamily: DNA-glycosylaseFamily: Mismatch glycosylase91 c2bcuA_
not modelled
85.9
11
PDB header: transferase, lyase/dnaChain: A: PDB Molecule: dna polymerase lambda;PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch
92 d2a1ja1
not modelled
85.3
11
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: Hef domain-like93 c3n5nX_
not modelled
85.0
21
PDB header: hydrolaseChain: X: PDB Molecule: a/g-specific adenine dna glycosylase;PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue
94 c1yqmA_
not modelled
84.9
19
PDB header: hydrolase/dnaChain: A: PDB Molecule: n-glycosylase/dna lyase;PDBTitle: catalytically inactive human 8-oxoguanine glycosylase2 crosslinked to 7-deazaguanine containing dna
95 c3gqcB_
not modelled
84.5
17
PDB header: transferase/dnaChain: B: PDB Molecule: dna repair protein rev1;PDBTitle: structure of human rev1-dna-dntp ternary complex
96 d1mpga1
not modelled
84.4
22
Fold: DNA-glycosylaseSuperfamily: DNA-glycosylaseFamily: DNA repair glycosylase, 2 C-terminal domains97 c1t3nB_
not modelled
83.8
15
PDB header: replication/dnaChain: B: PDB Molecule: polymerase (dna directed) iota;PDBTitle: structure of the catalytic core of dna polymerase iota in2 complex with dna and dttp
98 d1jx4a2
not modelled
83.3
20
Fold: DNA/RNA polymerasesSuperfamily: DNA/RNA polymerasesFamily: Lesion bypass DNA polymerase (Y-family), catalytic domain99 c2ziuA_
not modelled
81.9
15
PDB header: hydrolaseChain: A: PDB Molecule: mus81 protein;PDBTitle: crystal structure of the mus81-eme1 complex
100 c3n0uB_
not modelled
81.4
11
PDB header: hydrolase, lyaseChain: B: PDB Molecule: probable n-glycosylase/dna lyase;PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima
101 c1t4gA_
not modelled
80.8
17
PDB header: recombinationChain: A: PDB Molecule: dna repair and recombination protein rada;PDBTitle: atpase in complex with amp-pnp
102 d2bcqa1
not modelled
80.8
31
Fold: SAM domain-likeSuperfamily: DNA polymerase beta, N-terminal domain-likeFamily: DNA polymerase beta, N-terminal domain-like103 d1k1sa2
not modelled
80.4
22
Fold: DNA/RNA polymerasesSuperfamily: DNA/RNA polymerasesFamily: Lesion bypass DNA polymerase (Y-family), catalytic domain104 c1k1qA_
not modelled
80.4
22
PDB header: transcriptionChain: A: PDB Molecule: dbh protein;PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus
105 d2fmpa1
not modelled
80.2
25
Fold: SAM domain-likeSuperfamily: DNA polymerase beta, N-terminal domain-likeFamily: DNA polymerase beta, N-terminal domain-like106 c3senD_
not modelled
79.7
12
PDB header: signaling proteinChain: D: PDB Molecule: caskin-1;PDBTitle: structure of caskin1 tandem sams
107 d1nzpa_
not modelled
79.1
31
Fold: SAM domain-likeSuperfamily: DNA polymerase beta, N-terminal domain-likeFamily: DNA polymerase beta, N-terminal domain-like108 c2c5uA_
not modelled
79.1
18
PDB header: ligaseChain: A: PDB Molecule: rna ligase;PDBTitle: t4 rna ligase (rnl1) crystal structure
109 d1t94a2
not modelled
78.8
13
Fold: DNA/RNA polymerasesSuperfamily: DNA/RNA polymerasesFamily: Lesion bypass DNA polymerase (Y-family), catalytic domain110 d1coka_
not modelled
78.1
15
Fold: SAM domain-likeSuperfamily: SAM/Pointed domainFamily: SAM (sterile alpha motif) domain111 c2fllA_
not modelled
77.7
15
PDB header: replication/dnaChain: A: PDB Molecule: dna polymerase iota;PDBTitle: ternary complex of human dna polymerase iota with dna and dttp
112 c1szpC_
not modelled
75.4
18
PDB header: dna binding proteinChain: C: PDB Molecule: dna repair protein rad51;PDBTitle: a crystal structure of the rad51 filament
113 c1mpgB_
not modelled
75.2
20
PDB header: hydrolaseChain: B: PDB Molecule: 3-methyladenine dna glycosylase ii;PDBTitle: 3-methyladenine dna glycosylase ii from escherichia coli
114 d2bcqa2
not modelled
74.9
17
Fold: SAM domain-likeSuperfamily: PsbU/PolX domain-likeFamily: DNA polymerase beta-like, second domain115 d1dk2a_
not modelled
74.5
23
Fold: SAM domain-likeSuperfamily: DNA polymerase beta, N-terminal domain-likeFamily: DNA polymerase beta, N-terminal domain-like116 d2fmpa2
not modelled
74.4
15
Fold: SAM domain-likeSuperfamily: PsbU/PolX domain-likeFamily: DNA polymerase beta-like, second domain117 d1jmsa1
not modelled
74.0
9
Fold: SAM domain-likeSuperfamily: DNA polymerase beta, N-terminal domain-likeFamily: DNA polymerase beta, N-terminal domain-like118 c2kp7A_
not modelled
73.9
16
PDB header: hydrolaseChain: A: PDB Molecule: crossover junction endonuclease mus81;PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a
119 c1s97D_
not modelled
73.5
19
PDB header: transferase/dnaChain: D: PDB Molecule: dna polymerase iv;PDBTitle: dpo4 with gt mismatch
120 c1vddC_
not modelled
73.4
19
PDB header: recombinationChain: C: PDB Molecule: recombination protein recr;PDBTitle: crystal structure of recombinational repair protein recr
