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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c2hvsA_

Fold library idPDB HeaderMoleculeTitle
c2hvsA_PDB header: ligase/dna/rnaChain: A: PDB Molecule: t4 rna ligase 2;PDBTitle: structure of t4 rna ligase 2 with nicked 5'-adenylated2 nucleic acid duplex containing a 2'-deoxyribonucleotide at3 the nick


Added to library: Tue Mar 16 12:03:48 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SMFKKYSSLENHYNSKFIEKLYSLGLTGGEWVAREKIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYE
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Known secondary structure (DSSP)








TT
TTTT
S


SSS
TT

TT


TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence IILKNYADSIKAVQDIMETSAVVSYQVFGEFAGPGIQKNVDYGDKDFYVFDIIVTTESGDVTYVDDYMME
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Known secondary structure (DSSP) TTTTTSTTTSSS


SSSTT



 .........150.........160.........170.........180.........190.........200.........210
Sequence SFCNTFKFKMAPLLGRGKFEELIKLPNDLDSVVQDYNFTVDHAGLVDANKCVWNAEAKGEVFTAEGYVLK
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Known secondary structure (DSSP) T


TTS
TT
B

TTT








SSS
B

 .........220.........230.........240.........250.........260.........270.........280
Sequence PCYPSWLRNGNRVAIKCKNSKFELSEADNKLVGILACYVTLNRVNNVISKIGEIGPKDFGKVMGLTVQDI
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Known secondary structure (DSSP) SS



TT





S




STTGGG

T




TT
 .........290.........300.........310.........
Sequence LEETSREGITLTQADNPSLIKKELVKMVQDVLRPAWIEL
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Known secondary structure (DSSP) TT


TT
S
GGGTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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