Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c1a0iA_

Fold library idPDB HeaderMoleculeTitle
c1a0iA_PDB header: ligaseChain: A: PDB Molecule: dna ligase;PDBTitle: atp-dependent dna ligase from bacteriophage t7 complex with2 atp


Added to library: Tue Mar 16 13:32:29 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VNIKTNPFKAVSFVESAIKKALDNAGYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFDV
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP)
TT





SS


STTS
TTS
B
GGGGGG

 .........80.........90.........100.........110.........120.........130.........140
Sequence RWKRLLNDDRCFYKDGFMLDGELMVKGVDFNTGSGLLRTKWTDTKNQEFHRKKDKVPFKLHTGHLHIKLY
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) STT


TTSSS
TTT

S

SSBSS




S




B
TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence AILPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAAESYEVYDMVELQQLYEQKRAEGHEGL
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)



TTS

SSTTT


 .........220.........230.........240.........250.........260.........270.........280
Sequence IVKDPMCIYKRGKKSGWWKMKPENEADGIIQGLVWGTKGLANEGKVIGFEVLLESGRLVNATNISRALMD
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)
TT

SS




TTTSS
SS


TTS
B


S
 .........290.........300.........310.........320.........330..
Sequence EFTETVKEATLSQWGFFDACTINPYDGWACQISYMEETPDGSLRHPSFVMFR
Predicted secondary structure




























SS confidence



















































Known secondary structure (DSSP) TTTS








TTTT
S
TTS
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D