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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c2vugB_

Fold library idPDB HeaderMoleculeTitle
c2vugB_PDB header: ligaseChain: B: PDB Molecule: pab1020;PDBTitle: the structure of an archaeal homodimeric rna ligase


Added to library: Tue Mar 16 14:22:43 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KEILVKLGLTEDRIETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVIDEEYVIPGFPHIKRIINLRS
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Known secondary structure (DSSP)
TT

TTTSS


TTS


SS
BTTB
TT
TT






SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GIRRIFKRGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFICPFTTERIPDFVPQEFFKDNPNLILVGEMA
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Known secondary structure (DSSP) SSS



STTTTS
B
GGGTS
T
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence GPESPYLVEGPPYVKEDIQFFLFDVQEIKTGRSLPVEERLKIAEEYGINHVEVFGKYTKDDVDELYQLIE
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Known secondary structure (DSSP) SSS
SS
S


TT

SS
TTT

B

T

B


GGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence RLSKEGREGIIMKSPDMKKIVKYVTPYANINDIKIGARVFYELPPGYFTSRISRLAFYLAEKRIKGEEFE
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Known secondary structure (DSSP) TT


TTS


TTGGGS
TT

 .........290.........300.........310.........320.........330.........340.........350
Sequence RVAKELGSALLQPFVESIFDVEQEEDIHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIEEIKDGWRIT
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Known secondary structure (DSSP) TT


SSTTS
TT
 .........360.........370...
Sequence FKRLYPDATNEIRELIGGKAFVD
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Known secondary structure (DSSP)
TT





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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