PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3bacA_

Fold library id	PDB Header	Molecule	Title
c3bacA_	PDB header: ligase	Chain: A: PDB Molecule: dna ligase;	PDBTitle: structural basis for the inhibition of bacterial nad+2 dependent dna ligase

Links to external resources
Added to library: Tue Mar 16 12:08:19 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G F S Q I R H E I P M L S L D N A F S D A E F N A F V K R I E D R L I L L P K P L T F C C E P K L D G L A V S I L Y V N G E L T Q A A T R G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S S S
S S
S S T T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D G T T G E D I T A N I R T I R N V P L Q L L T D N P P A R L E V R G E V F M P H A G F E R L N K Y A L E H N E K T F A N P R N A A A G S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S B
T
T T S
S B
S S S
S
T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R Q L D P N I T S K R P L V L N A Y G I G I A E G V G L P T T H Y A R L Q W L K S I G I P V N P E I R L C N G A D E V L D F Y Q D I Q N K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S
S
S B T T
B
T T
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . .

Sequence S S L G Y D I D G T V L K I N D I A L Q N E L G F I S K A P R W A I A Y K F P A Q E E L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S S
S B
S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	F	S	Q	I	R	H	E	I	P	M	L	S	L	D	N	A	F	S	D	A	E	F	N	A	F	V	K	R	I	E	D	R	L	I	L	L	P	K	P	L	T	F	C	C	E	P	K	L	D	G	L	A	V	S	I	L	Y	V	N	G	E	L	T	Q	A	A	T	R	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S										S															S	S	S			S	S										S	S									T	T									T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	G	T	T	G	E	D	I	T	A	N	I	R	T	I	R	N	V	P	L	Q	L	L	T	D	N	P	P	A	R	L	E	V	R	G	E	V	F	M	P	H	A	G	F	E	R	L	N	K	Y	A	L	E	H	N	E	K	T	F	A	N	P	R	N	A	A	A	G	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	S				B							T		T	T	S		S	B			S	S	S			S																									T	T					S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	Q	L	D	P	N	I	T	S	K	R	P	L	V	L	N	A	Y	G	I	G	I	A	E	G	V	G	L	P	T	T	H	Y	A	R	L	Q	W	L	K	S	I	G	I	P	V	N	P	E	I	R	L	C	N	G	A	D	E	V	L	D	F	Y	Q	D	I	Q	N	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		S	S							S														S					S	B											T	T			B		T	T																			T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Sequence	S	S	L	G	Y	D	I	D	G	T	V	L	K	I	N	D	I	A	L	Q	N	E	L	G	F	I	S	K	A	P	R	W	A	I	A	Y	K	F	P	A	Q	E	E	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	S	S										S	B													S		S	S