Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0AC00
DateThu Jan 5 11:16:48 GMT 2012
Unique Job ID67ca1a7ad19cbce9

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2a3nA_
Top template information
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative glucosamine-fructose-6-phosphate aminotransferase;
PDBTitle: crystal structure of a putative glucosamine-fructose-6-phosphate2 aminotransferase (stm4540.s) from salmonella typhimurium lt2 at 1.353 a resolution
Confidence and coverage
Confidence:100.0% Coverage: 95%
323 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MLDIDKSTVDFLVTENMVQEVEKVLSHDVPLVHAIVEEMVKRDIDRIYFVACGSPLNAAQ
Secondary structure 











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Disorder  ??????





















































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   .........70.........80.........90.........100.........110.........120
Sequence  TAKHLADRFSDLQVYAISGWEFCDNTPYRLDDRCAVIGVSDYGKTEEVIKALELGRACGA
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   .........130.........140.........150.........160.........170.........180
Sequence  LTAAFTKRADSPITSAAEFSIDYQADCIWEIHLLLCYSVVLEMITRLAPNAEIGKIKNDL
Secondary structure 















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?






























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   .........190.........200.........210.........220.........230.........240
Sequence  KQLPNALGHLVRTWEEKGRQLGELASQWPMIYTVAAGPLRPLGYKEGIVTLMEFTWTHGC
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   .........250.........260.........270.........280.........290.........300
Sequence  VIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTERAINFVKQRTDNVIVIDYAEISQGL
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   .........310.........320.........330.........340
Sequence  HPWLAPFLMFVPMEWLCYYLSIYKDHNPDERRYYGGLVEY
Secondary structure 

















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???
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2a3n chain A

3D model

Region: 14 - 337
Aligned: 323
Modelled: 324
Confidence: 100.0%
Identity: 24%
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative glucosamine-fructose-6-phosphate aminotransferase;
PDBTitle: crystal structure of a putative glucosamine-fructose-6-phosphate2 aminotransferase (stm4540.s) from salmonella typhimurium lt2 at 1.353 a resolution

Phyre2

PDB 1jxa chain A

3D model

Region: 3 - 338
Aligned: 333
Modelled: 336
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:glucosamine 6-phosphate synthase;
PDBTitle: glucosamine 6-phosphate synthase with glucose 6-phosphate

Phyre2

PDB 3fkj chain A

3D model

Region: 24 - 340
Aligned: 314
Modelled: 317
Confidence: 100.0%
Identity: 26%
PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerases;
PDBTitle: crystal structure of a putative phosphosugar isomerase (stm_0572) from2 salmonella typhimurium lt2 at 2.12 a resolution

Phyre2

PDB 3eua chain D

3D model

Region: 30 - 337
Aligned: 307
Modelled: 297
Confidence: 100.0%
Identity: 28%
PDB header:isomerase
Chain: D: PDB Molecule:putative fructose-aminoacid-6-phosphate deglycase;
PDBTitle: crystal structure of a putative phosphosugar isomerase (bsu32610) from2 bacillus subtilis at 1.90 a resolution

Phyre2

PDB 2aml chain B

3D model

Region: 5 - 333
Aligned: 325
Modelled: 328
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: B: PDB Molecule:sis domain protein;
PDBTitle: crystal structure of lmo0035 protein (46906266) from listeria2 monocytogenes 4b f2365 at 1.50 a resolution

Phyre2

PDB 3g68 chain A

3D model

Region: 14 - 339
Aligned: 323
Modelled: 324
Confidence: 100.0%
Identity: 15%
PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of a putative phosphosugar isomerase (cd3275) from2 clostridium difficile 630 at 1.80 a resolution

Phyre2

PDB 2zj3 chain A

3D model

Region: 6 - 338
Aligned: 328
Modelled: 333
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate
PDBTitle: isomerase domain of human glucose:fructose-6-phosphate2 amidotransferase

Phyre2

PDB 3odp chain A

3D model

Region: 14 - 339
Aligned: 323
Modelled: 326
Confidence: 100.0%
Identity: 15%
PDB header:isomerase
Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase;
PDBTitle: crystal structure of a putative tagatose-6-phosphate ketose/aldose2 isomerase (nt01cx_0292) from clostridium novyi nt at 2.35 a3 resolution

Phyre2

PDB 1moq chain A

3D model

Region: 5 - 338
Aligned: 329
Modelled: 334
Confidence: 100.0%
Identity: 19%
Fold: SIS domain
Superfamily: SIS domain
Family: double-SIS domain

Phyre2

PDB 3fj1 chain A

3D model

Region: 6 - 329
Aligned: 319
Modelled: 321
Confidence: 100.0%
Identity: 20%
PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of putative phosphosugar isomerase (yp_167080.1)2 from silicibacter pomeroyi dss-3 at 1.75 a resolution

Phyre2

PDB 3i0z chain B

3D model

Region: 2 - 340
Aligned: 334
Modelled: 339
Confidence: 100.0%
Identity: 14%
PDB header:isomerase
Chain: B: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase;
PDBTitle: crystal structure of putative putative tagatose-6-phosphate2 ketose/aldose isomerase (np_344614.1) from streptococcus pneumoniae3 tigr4 at 1.70 a resolution

Phyre2

PDB 1j5x chain A

3D model

Region: 16 - 338
Aligned: 316
Modelled: 323
Confidence: 100.0%
Identity: 18%
Fold: SIS domain
Superfamily: SIS domain
Family: double-SIS domain

Phyre2

PDB 3tbf chain A

3D model

Region: 7 - 331
Aligned: 320
Modelled: 325
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate aminotransferase
PDBTitle: c-terminal domain of glucosamine-fructose-6-phosphate aminotransferase2 from francisella tularensis.

Phyre2

PDB 3knz chain A

3D model

Region: 8 - 320
Aligned: 309
Modelled: 313
Confidence: 100.0%
Identity: 17%
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative sugar binding protein;
PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution

Phyre2

PDB 2dec chain A

3D model

Region: 16 - 340
Aligned: 310
Modelled: 324
Confidence: 100.0%
Identity: 16%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:325aa long hypothetical protein;
PDBTitle: crystal structure of the ph0510 protein from pyrococcus horikoshii ot3

Phyre2

PDB 3c3j chain A

3D model

Region: 5 - 331
Aligned: 323
Modelled: 326
Confidence: 100.0%
Identity: 13%
PDB header:isomerase
Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase;
PDBTitle: crystal structure of tagatose-6-phosphate ketose/aldose isomerase from2 escherichia coli

Phyre2

PDB 3hba chain A

3D model

Region: 6 - 330
Aligned: 308
Modelled: 314
Confidence: 100.0%
Identity: 19%
PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of a putative phosphosugar isomerase (sden_2705)2 from shewanella denitrificans os217 at 2.00 a resolution

Phyre2

PDB 2puw chain A

3D model

Region: 9 - 329
Aligned: 305
Modelled: 312
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:isomerase domain of glutamine-fructose-6-phosphate
PDBTitle: the crystal structure of isomerase domain of glucosamine-6-phosphate2 synthase from candida albicans

Phyre2

PDB 1x9i chain A

3D model

Region: 42 - 336
Aligned: 262
Modelled: 295
Confidence: 100.0%
Identity: 14%
Fold: SIS domain
Superfamily: SIS domain
Family: double-SIS domain

Phyre2

PDB 3sho chain A

3D model

Region: 5 - 189
Aligned: 182
Modelled: 185
Confidence: 99.9%
Identity: 17%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, rpir family;
PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain)

Phyre2
1

c2a3nA_
2

c1jxaA_
3

c3fkjA_
4

c3euaD_
5

c2amlB_
6

c3g68A_
7

c2zj3A_
8

c3odpA_
9

d1moqa_
10

c3fj1A_
11

c3i0zB_
12

d1j5xa_
13

c3tbfA_
14

c3knzA_
15

c2decA_
16

c3c3jA_
17

c3hbaA_
18

c2puwA_
19

d1x9ia_
20

c3shoA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2a3nA_



100.0 24 PDB header:sugar binding protein
Chain: A: PDB Molecule:putative glucosamine-fructose-6-phosphate aminotransferase;
PDBTitle: crystal structure of a putative glucosamine-fructose-6-phosphate2 aminotransferase (stm4540.s) from salmonella typhimurium lt2 at 1.353 a resolution
2c1jxaA_



100.0 19 PDB header:transferase
Chain: A: PDB Molecule:glucosamine 6-phosphate synthase;
PDBTitle: glucosamine 6-phosphate synthase with glucose 6-phosphate
3c3fkjA_



100.0 26 PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerases;
PDBTitle: crystal structure of a putative phosphosugar isomerase (stm_0572) from2 salmonella typhimurium lt2 at 2.12 a resolution
4c3euaD_



100.0 28 PDB header:isomerase
Chain: D: PDB Molecule:putative fructose-aminoacid-6-phosphate deglycase;
PDBTitle: crystal structure of a putative phosphosugar isomerase (bsu32610) from2 bacillus subtilis at 1.90 a resolution
5c2amlB_



100.0 20 PDB header:transferase
Chain: B: PDB Molecule:sis domain protein;
PDBTitle: crystal structure of lmo0035 protein (46906266) from listeria2 monocytogenes 4b f2365 at 1.50 a resolution
6c3g68A_



100.0 15 PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of a putative phosphosugar isomerase (cd3275) from2 clostridium difficile 630 at 1.80 a resolution
7c2zj3A_



100.0 20 PDB header:transferase
Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate
PDBTitle: isomerase domain of human glucose:fructose-6-phosphate2 amidotransferase
8c3odpA_



100.0 15 PDB header:isomerase
Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase;
PDBTitle: crystal structure of a putative tagatose-6-phosphate ketose/aldose2 isomerase (nt01cx_0292) from clostridium novyi nt at 2.35 a3 resolution
9d1moqa_



100.0 19 Fold:SIS domain
Superfamily:SIS domain
Family:double-SIS domain
10c3fj1A_



100.0 20 PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of putative phosphosugar isomerase (yp_167080.1)2 from silicibacter pomeroyi dss-3 at 1.75 a resolution
11c3i0zB_



100.0 14 PDB header:isomerase
Chain: B: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase;
PDBTitle: crystal structure of putative putative tagatose-6-phosphate2 ketose/aldose isomerase (np_344614.1) from streptococcus pneumoniae3 tigr4 at 1.70 a resolution
12d1j5xa_



100.0 18 Fold:SIS domain
Superfamily:SIS domain
Family:double-SIS domain
13c3tbfA_



100.0 20 PDB header:transferase
Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate aminotransferase
PDBTitle: c-terminal domain of glucosamine-fructose-6-phosphate aminotransferase2 from francisella tularensis.
14c3knzA_



100.0 17 PDB header:sugar binding protein
Chain: A: PDB Molecule:putative sugar binding protein;
PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution
15c2decA_



100.0 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:325aa long hypothetical protein;
PDBTitle: crystal structure of the ph0510 protein from pyrococcus horikoshii ot3
16c3c3jA_



100.0 13 PDB header:isomerase
Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase;
PDBTitle: crystal structure of tagatose-6-phosphate ketose/aldose isomerase from2 escherichia coli
17c3hbaA_



100.0 19 PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of a putative phosphosugar isomerase (sden_2705)2 from shewanella denitrificans os217 at 2.00 a resolution
18c2puwA_



100.0 18 PDB header:transferase
Chain: A: PDB Molecule:isomerase domain of glutamine-fructose-6-phosphate
PDBTitle: the crystal structure of isomerase domain of glucosamine-6-phosphate2 synthase from candida albicans
19d1x9ia_



100.0 14 Fold:SIS domain
Superfamily:SIS domain
Family:double-SIS domain
20c3shoA_



99.9 17 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, rpir family;
PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain)
21c2xhzC_



not modelled 99.9 12 PDB header:isomerase
Chain: C: PDB Molecule:arabinose 5-phosphate isomerase;
PDBTitle: probing the active site of the sugar isomerase domain from e. coli2 arabinose-5-phosphate isomerase via x-ray crystallography
22c3etnD_



not modelled 99.9 16 PDB header:isomerase
Chain: D: PDB Molecule:putative phosphosugar isomerase involved in capsule
PDBTitle: crystal structure of putative phosphosugar isomerase involved in2 capsule formation (yp_209877.1) from bacteroides fragilis nctc 93433 at 1.70 a resolution
23c3fxaA_



not modelled 99.9 14 PDB header:sugar binding protein
Chain: A: PDB Molecule:sis domain protein;
PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution
24c1nriA_



not modelled 99.8 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein hi0754;
PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae
25d1nria_



not modelled 99.8 16 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
26d1vima_



not modelled 99.8 16 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
27d1m3sa_



not modelled 99.8 14 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
28d1tk9a_



not modelled 99.8 17 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
29d1x94a_



not modelled 99.8 14 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
30d1x92a_



not modelled 99.8 16 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
31c2x3yA_



not modelled 99.8 13 PDB header:isomerase
Chain: A: PDB Molecule:phosphoheptose isomerase;
PDBTitle: crystal structure of gmha from burkholderia pseudomallei
32c3trjC_



not modelled 99.8 12 PDB header:isomerase
Chain: C: PDB Molecule:phosphoheptose isomerase;
PDBTitle: structure of a phosphoheptose isomerase from francisella tularensis
33c3cvjB_



not modelled 99.8 13 PDB header:isomerase
Chain: B: PDB Molecule:putative phosphoheptose isomerase;
PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution
34c2yvaB_



not modelled 99.7 13 PDB header:dna binding protein
Chain: B: PDB Molecule:dnaa initiator-associating protein diaa;
PDBTitle: crystal structure of escherichia coli diaa
35d1jeoa_



not modelled 99.7 12 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
36c3ff1B_



not modelled 99.3 13 PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: structure of glucose 6-phosphate isomerase from staphylococcus aureus
37c1zzgB_



not modelled 99.3 13 PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of hypothetical protein tt0462 from thermus2 thermophilus hb8
38d1wiwa_



not modelled 99.3 15 Fold:SIS domain
Superfamily:SIS domain
Family:double-SIS domain
39d1c7qa_



not modelled 99.3 13 Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
40c2q8nB_



not modelled 99.2 13 PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of glucose-6-phosphate isomerase (ec2 5.3.1.9) (tm1385) from thermotoga maritima at 1.82 a3 resolution
41c3ljkA_



not modelled 99.2 12 PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: glucose-6-phosphate isomerase from francisella tularensis.
42d1gzda_



not modelled 99.1 15 Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
43d1q50a_



not modelled 99.1 14 Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
44c1t10A_



not modelled 99.0 13 PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: phosphoglucose isomerase from leishmania mexicana in complex with2 substrate d-fructose-6-phosphate
45c3pr3B_



not modelled 99.0 8 PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of plasmodium falciparum glucose-6-phosphate2 isomerase (pf14_0341) in complex with fructose-6-phosphate
46c2o2cB_



not modelled 99.0 10 PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase, glycosomal;
PDBTitle: crystal structure of phosphoglucose isomerase from t. brucei2 containing glucose-6-phosphate in the active site
47c3hjbA_



not modelled 99.0 14 PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: 1.5 angstrom crystal structure of glucose-6-phosphate isomerase from2 vibrio cholerae.
48d1iata_



not modelled 99.0 11 Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
49c3nbuC_



not modelled 98.9 10 PDB header:isomerase
Chain: C: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of pgi glucosephosphate isomerase
50d1u0fa_



not modelled 98.9 12 Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
51d1hm5a_



not modelled 98.9 10 Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
52c2wu8A_



not modelled 98.8 9 PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: structural studies of phosphoglucose isomerase from2 mycobacterium tuberculosis h37rv
53c3ujhB_



not modelled 98.8 15 PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of substrate-bound glucose-6-phosphate isomerase2 from toxoplasma gondii
54d2iv2x2



not modelled 96.0 11 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
55c2ivfA_



not modelled 95.9 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
56c2e7zA_



not modelled 95.6 6 PDB header:lyase
Chain: A: PDB Molecule:acetylene hydratase ahy;
PDBTitle: acetylene hydratase from pelobacter acetylenicus
57d2jioa2



not modelled 95.3 9 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
58d1p3da1



not modelled 94.4 11 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
59c1h0hA_



not modelled 94.4 11 PDB header:dehydrogenase
Chain: A: PDB Molecule:formate dehydrogenase (large subunit);
PDBTitle: tungsten containing formate dehydrogenase from2 desulfovibrio gigas
60c1tmoA_



not modelled 94.0 4 PDB header:oxidoreductase
Chain: A: PDB Molecule:trimethylamine n-oxide reductase;
PDBTitle: trimethylamine n-oxide reductase from shewanella massilia
61c2vpyE_



not modelled 93.6 10 PDB header:oxidoreductase
Chain: E: PDB Molecule:thiosulfate reductase;
PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)
62d1j6ua1



not modelled 92.9 19 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
63c1h5nC_



not modelled 92.5 12 PDB header:oxidoreductase
Chain: C: PDB Molecule:dmso reductase;
PDBTitle: dmso reductase modified by the presence of dms and air
64d1tmoa2



not modelled 92.2 5 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
65d1vlfm2



not modelled 92.1 7 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
66d1ogya2



not modelled 91.6 12 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
67d1vi6a_



not modelled 91.6 10 Fold:Flavodoxin-like
Superfamily:Ribosomal protein S2
Family:Ribosomal protein S2
68c2v45A_



not modelled 91.5 8 PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand
69c3iz6A_



not modelled 91.3 10 PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein sa (s2p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
70d1dmra2



not modelled 90.7 12 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
71c2zkqb_



not modelled 90.4 7 PDB header:ribosomal protein/rna
Chain: B: PDB Molecule:rna expansion segment es3;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
72c2f00A_



not modelled 89.9 13 PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: escherichia coli murc
73c1vlfQ_



not modelled 89.7 7 PDB header:oxidoreductase
Chain: Q: PDB Molecule:pyrogallol hydroxytransferase large subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici complexed3 with inhibitor 1,2,4,5-tetrahydroxy-benzene
74c2nyaF_



not modelled 89.3 8 PDB header:oxidoreductase
Chain: F: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: crystal structure of the periplasmic nitrate reductase2 (nap) from escherichia coli
75c1y5iA_



not modelled 88.5 9 PDB header:oxidoreductase
Chain: A: PDB Molecule:respiratory nitrate reductase 1 alpha chain;
PDBTitle: the crystal structure of the narghi mutant nari-k86a
76d1h0ha2



not modelled 88.4 12 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
77c3izbA_



not modelled 88.0 9 PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein rps0 (s2p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
78c2iv2X_



not modelled 88.0 11 PDB header:oxidoreductase
Chain: X: PDB Molecule:formate dehydrogenase h;
PDBTitle: reinterpretation of reduced form of formate dehydrogenase h2 from e. coli
79d1m2ka_



not modelled 86.5 11 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
80c1kqgA_



not modelled 86.5 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:formate dehydrogenase, nitrate-inducible, major subunit;
PDBTitle: formate dehydrogenase n from e. coli
81d1y5ia2



not modelled 86.4 10 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
82d2b4ya1



not modelled 86.3 13 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
83d2jfga1



not modelled 85.8 8 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
84d1yc5a1



not modelled 85.5 6 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
85c1j6uA_



not modelled 85.4 12 PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc;
PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution
86d1eu1a2



not modelled 85.2 6 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
87c3jwpA_



not modelled 85.0 0 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein sir2 homologue;
PDBTitle: crystal structure of plasmodium falciparum sir2a (pf13_0152) in2 complex with amp
88d1ma3a_



not modelled 84.5 9 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
89c3k35D_



not modelled 83.7 7 PDB header:hydrolase
Chain: D: PDB Molecule:nad-dependent deacetylase sirtuin-6;
PDBTitle: crystal structure of human sirt6
90c3pkiF_



not modelled 82.4 7 PDB header:hydrolase
Chain: F: PDB Molecule:nad-dependent deacetylase sirtuin-6;
PDBTitle: human sirt6 crystal structure in complex with adp ribose
91c2h0rD_



not modelled 81.9 17 PDB header:hydrolase
Chain: D: PDB Molecule:nicotinamidase;
PDBTitle: structure of the yeast nicotinamidase pnc1p
92c2xznB_



not modelled 81.7 6 PDB header:ribosome
Chain: B: PDB Molecule:rps0e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
93c1s1hB_



not modelled 81.2 10 PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein s0-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i.
94d1dkua1



not modelled 80.6 16 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosylpyrophosphate synthetase-like
95d1u9ya1



not modelled 78.4 16 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosylpyrophosphate synthetase-like
96d1g8ka2



not modelled 77.6 12 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
97d2gy9b1



not modelled 77.6 18 Fold:Flavodoxin-like
Superfamily:Ribosomal protein S2
Family:Ribosomal protein S2
98c3bchA_



not modelled 75.8 9 PDB header:cell adhesion, ribosomal protein
Chain: A: PDB Molecule:40s ribosomal protein sa;
PDBTitle: crystal structure of the human laminin receptor precursor
99c3jx9B_



not modelled 75.5 11 PDB header:isomerase
Chain: B: PDB Molecule:putative phosphoheptose isomerase;
PDBTitle: crystal structure of putative phosphoheptose isomerase2 (yp_001815198.1) from exiguobacterium sp. 255-15 at 1.95 a resolution
100c1ogyA_



not modelled 75.4 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: crystal structure of the heterodimeric nitrate reductase2 from rhodobacter sphaeroides
101c2z04A_



not modelled 75.3 14 PDB header:lyase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase
PDBTitle: crystal structure of phosphoribosylaminoimidazole2 carboxylase atpase subunit from aquifex aeolicus
102d1kqfa2



not modelled 73.2 11 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
103d1kjqa2



not modelled 72.7 18 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
104c2dwcB_



not modelled 72.7 15 PDB header:transferase
Chain: B: PDB Molecule:433aa long hypothetical phosphoribosylglycinamide formyl
PDBTitle: crystal structure of probable phosphoribosylglycinamide formyl2 transferase from pyrococcus horikoshii ot3 complexed with adp
105c1kjjA_



not modelled 72.5 21 PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase 2;
PDBTitle: crystal structure of glycniamide ribonucleotide2 transformylase in complex with mg-atp-gamma-s
106c3e96B_



not modelled 72.1 23 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 bacillus clausii
107c2z2uA_



not modelled 70.9 16 PDB header:metal binding protein
Chain: A: PDB Molecule:upf0026 protein mj0257;
PDBTitle: crystal structure of archaeal tyw1
108c2ehhE_



not modelled 70.4 18 PDB header:lyase
Chain: E: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 aquifex aeolicus
109d1xjca_



not modelled 70.2 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
110c3bbnB_



not modelled 70.1 32 PDB header:ribosome
Chain: B: PDB Molecule:ribosomal protein s2;
PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.
111d2ji7a1



not modelled 68.8 4 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
112c3q2oB_



not modelled 68.4 19 PDB header:lyase
Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit;
PDBTitle: crystal structure of purk: n5-carboxyaminoimidazole ribonucleotide2 synthetase
113c3uvzB_



not modelled 68.3 16 PDB header:lyase
Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit;
PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase, atpase2 subunit from burkholderia ambifaria
114c1eu1A_



not modelled 67.2 6 PDB header:oxidoreductase
Chain: A: PDB Molecule:dimethyl sulfoxide reductase;
PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments.
115c3lciA_



not modelled 67.0 13 PDB header:lyase
Chain: A: PDB Molecule:n-acetylneuraminate lyase;
PDBTitle: the d-sialic acid aldolase mutant v251w
116c2rfgB_



not modelled 66.3 14 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from hahella2 chejuensis at 1.5a resolution
117c2yxgD_



not modelled 65.9 15 PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa)
118c3dahB_



not modelled 65.3 14 PDB header:transferase
Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase;
PDBTitle: 2.3 a crystal structure of ribose-phosphate pyrophosphokinase from2 burkholderia pseudomallei
119c3daqB_



not modelled 65.0 20 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from methicillin-2 resistant staphylococcus aureus
120d1o5ka_



not modelled 64.6 14 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0