Email l.a.kelley@imperial.ac.uk Description P0A8G0 Date Thu Jan 5 11:07:45 GMT 2012 Unique Job ID 38b01ba5f127d1ce

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2nrzB_ 100.0 38 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 2 c3c65A_ 100.0 34 PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of bacillus stearothermophilus uvrc 5'2 endonuclease domain 3 c2nrrA_ 100.0 40 PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal rnaseh endonuclase2 domain of uvrc 4 c1yd2A_ 99.9 34 PDB header:dna binding protein Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease domain of2 uvrc from thermotoga maritima: point mutant y19f bound to the3 catalytic divalent cation 5 c2wshC_ 99.9 21 PDB header:hydrolase Chain: C: PDB Molecule:endonuclease ii; PDBTitle: structure of bacteriophage t4 endoii e118a mutant 6 c1yd6A_ 99.9 48 PDB header:dna binding protein Chain: A: PDB Molecule:uvrc; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease2 domain of uvrc from bacillus caldotenax 7 d1kfta_ 99.4 100 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 8 c1kftA_ 99.4 100 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 9 d1x2ia1 99.2 27 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 10 d2aq0a1 99.2 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 11 d2bgwa1 99.2 30 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 12 d2a1jb1 99.2 28 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 13 d2i1qa1 98.9 27 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 14 d1pzna1 98.8 35 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 15 d1mk0a_ 98.7 20 Fold:GIY-YIG endonuclease Superfamily:GIY-YIG endonuclease Family:GIY-YIG endonuclease 16 d1dgsa1 98.7 29 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 17 c2bhnD_ 98.6 30 PDB header:hydrolase Chain: D: PDB Molecule:xpf endonuclease; PDBTitle: xpf from aeropyrum pernix 18 d1szpa1 98.5 15 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 19 d1e52a_ 98.5 37 Fold:Long alpha-hairpin Superfamily:C-terminal UvrC-binding domain of UvrB Family:C-terminal UvrC-binding domain of UvrB 20 c2owoA_ 98.4 31 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 21 c1dgsB_ not modelled 98.4 29 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 22 c1ixrA_ not modelled 98.4 26 PDB header:hydrolase Chain: A: PDB Molecule:holliday junction dna helicase ruva; PDBTitle: ruva-ruvb complex 23 c1v9pB_ not modelled 98.4 29 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 24 d1b22a_ not modelled 98.3 21 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 25 c1b22A_ not modelled 98.3 21 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: rad51 (n-terminal domain) 26 d1cuka2 not modelled 98.2 26 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 27 d1ixra1 not modelled 98.1 26 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 28 c3c1zA_ not modelled 98.1 26 PDB header:dna binding protein Chain: A: PDB Molecule:dna integrity scanning protein disa; PDBTitle: structure of the ligand-free form of a bacterial dna damage2 sensor protein 29 d1szpb1 not modelled 97.8 18 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 30 c1hjpA_ not modelled 97.8 31 PDB header:dna recombination Chain: A: PDB Molecule:ruva; PDBTitle: holliday junction binding protein ruva from e. coli 31 c1d8lA_ not modelled 97.8 31 PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii 32 c2h5xA_ not modelled 97.7 30 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis 33 d1bvsa2 not modelled 97.7 28 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 34 c2w36B_ not modelled 97.5 24 PDB header:hydrolase Chain: B: PDB Molecule:endonuclease v; PDBTitle: structures of endonuclease v with dna reveal initiation of2 deaminated adenine repair 35 c2va8A_ not modelled 97.4 21 PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 36 c2p6uA_ not modelled 97.3 18 PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase 37 d2a1ja1 not modelled 97.3 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 38 c3dlbA_ not modelled 97.2 18 PDB header:nucleic acid binding protein/dna Chain: A: PDB Molecule:argonaute; PDBTitle: crystal structure of the guide-strand-containing argonaute2 protein silencing complex 39 d1qoja_ not modelled 97.1 44 Fold:Long alpha-hairpin Superfamily:C-terminal UvrC-binding domain of UvrB Family:C-terminal UvrC-binding domain of UvrB 40 c1s5lu_ not modelled 97.0 20 PDB header:photosynthesis Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 41 d2axtu1 not modelled 96.9 20 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:PsbU-like 42 c2d7dB_ not modelled 96.9 32 PDB header:hydrolase/dna Chain: B: PDB Molecule:40-mer from uvrabc system protein b; PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb 43 d2p6ra2 not modelled 96.8 16 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Achaeal helicase C-terminal domain 44 c3ga2A_ not modelled 96.8 18 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease v; PDBTitle: crystal structure of the endonuclease_v (bsu36170) from2 bacillus subtilis, northeast structural genomics3 consortium target sr624 45 c2csdB_ not modelled 96.5 29 PDB header:isomerase Chain: B: PDB Molecule:topoisomerase v; PDBTitle: crystal structure of topoisomerase v (61 kda fragment) 46 c3gocB_ not modelled 96.5 17 PDB header:hydrolase Chain: B: PDB Molecule:endonuclease v; PDBTitle: crystal structure of the endonuclease v (sav1684) from streptomyces2 avermitilis. northeast structural genomics consortium target svr196 47 c2izoA_ not modelled 96.5 16 PDB header:hydrolase Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: structure of an archaeal pcna1-pcna2-fen1 complex 48 c2ihmA_ not modelled 96.4 10 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide 49 d1xo1a1 not modelled 96.1 23 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 50 c2ziuA_ not modelled 96.1 17 PDB header:hydrolase Chain: A: PDB Molecule:mus81 protein; PDBTitle: crystal structure of the mus81-eme1 complex 51 c1ut8B_ not modelled 95.9 23 PDB header:hydrolase Chain: B: PDB Molecule:exodeoxyribonuclease; PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease 52 d2duya1 not modelled 95.9 25 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 53 d1a77a1 not modelled 95.8 23 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 54 c1kdhA_ not modelled 95.8 18 PDB header:transferase/dna Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna 55 c2w9mB_ not modelled 95.4 33 PDB header:dna replication Chain: B: PDB Molecule:polymerase x; PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans 56 d1ul1x1 not modelled 95.4 27 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 57 d2edua1 not modelled 95.3 23 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 58 c3mr2A_ not modelled 95.3 10 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm) 59 d1rxwa1 not modelled 95.2 26 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 60 c3nicA_ not modelled 95.1 40 PDB header:hydrolase/dna Chain: A: PDB Molecule:eco29kir; PDBTitle: dna binding and cleavage by the giy-yig endonuclease r.eco29ki2 inactive variant y49f 61 d3bzka1 not modelled 95.1 16 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Tex HhH-containing domain-like 62 c2zixA_ not modelled 95.1 21 PDB header:hydrolase Chain: A: PDB Molecule:crossover junction endonuclease mus81; PDBTitle: crystal structure of the mus81-eme1 complex 63 d1mc8a1 not modelled 94.8 15 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 64 d1b43a1 not modelled 94.8 15 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 65 c8iczA_ not modelled 94.8 26 PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7)); PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar) 66 c1ywlA_ not modelled 94.5 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0213 protein ef2693; PDBTitle: solution nmr structure of the protein ef2693 from e.2 faecalis: northeast structural genomics consortium target3 efr36 67 c2aq4A_ not modelled 94.4 24 PDB header:transferase Chain: A: PDB Molecule:dna repair protein rev1; PDBTitle: ternary complex of the catalytic core of rev1 with dna and dctp. 68 d2csba4 not modelled 94.1 33 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 69 c3q8lA_ not modelled 94.0 30 PDB header:hydrolase/dna Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+ 70 c1zg2A_ not modelled 93.8 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0213 protein bh0048; PDBTitle: solution nmr structure of the upf0213 protein bh0048 from2 bacillus halodurans. northeast structural genomics target3 bhr2. 71 c1rxvA_ not modelled 93.8 24 PDB header:hydrolase/dna Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: crystal structure of a. fulgidus fen-1 bound to dna 72 c2bcuA_ not modelled 93.6 17 PDB header:transferase, lyase/dna Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch 73 c1a77A_ not modelled 93.5 24 PDB header:5'-3' exo/endo nuclease Chain: A: PDB Molecule:flap endonuclease-1 protein; PDBTitle: flap endonuclease-1 from methanococcus jannaschii 74 c1b43A_ not modelled 93.4 15 PDB header:transferase Chain: A: PDB Molecule:protein (fen-1); PDBTitle: fen-1 from p. furiosus 75 c1nomA_ not modelled 93.2 22 PDB header:nucleotidyltransferase Chain: A: PDB Molecule:dna polymerase beta; PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar) 76 d1cmwa1 not modelled 92.9 31 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 77 d2csba3 not modelled 92.8 27 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 78 c1ul1Y_ not modelled 92.6 30 PDB header:hydrolase/dna binding protein Chain: Y: PDB Molecule:flap endonuclease-1; PDBTitle: crystal structure of the human fen1-pcna complex 79 d2q0zx1 not modelled 92.4 7 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Sec63 N-terminal domain 80 d1t94a2 not modelled 92.3 18 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 81 c3majA_ not modelled 92.0 22 PDB header:dna binding protein Chain: A: PDB Molecule:dna processing chain a; PDBTitle: crystal structure of putative dna processing protein dpra from2 rhodopseudomonas palustris cga009 82 c1cmwA_ not modelled 91.8 25 PDB header:transferase Chain: A: PDB Molecule:protein (dna polymerase i); PDBTitle: crystal structure of taq dna-polymerase shows a new2 orientation for the structure-specific nuclease domain 83 c2r8kB_ not modelled 91.6 13 PDB header:replication, transferase/dna Chain: B: PDB Molecule:dna polymerase eta; PDBTitle: structure of the eukaryotic dna polymerase eta in complex with 1,2-2 d(gpg)-cisplatin containing dna 84 c3im2A_ not modelled 91.6 9 PDB header:hydrolase Chain: A: PDB Molecule:pre-mrna-splicing helicase brr2; PDBTitle: structure of the c-terminal sec63 unit of yeast brr2, p41212 form 85 c2oceA_ not modelled 91.5 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa 86 c3oryA_ not modelled 91.1 35 PDB header:hydrolase Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of flap endonuclease 1 from hyperthermophilic2 archaeon desulfurococcus amylolyticus 87 c1t3nB_ not modelled 91.1 22 PDB header:replication/dna Chain: B: PDB Molecule:polymerase (dna directed) iota; PDBTitle: structure of the catalytic core of dna polymerase iota in2 complex with dna and dttp 88 c3gqcB_ not modelled 90.4 12 PDB header:transferase/dna Chain: B: PDB Molecule:dna repair protein rev1; PDBTitle: structure of human rev1-dna-dntp ternary complex 89 d2bcqa1 not modelled 90.4 23 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 90 c1jihA_ not modelled 90.1 13 PDB header:translation Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: yeast dna polymerase eta 91 c2fllA_ not modelled 89.3 24 PDB header:replication/dna Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: ternary complex of human dna polymerase iota with dna and dttp 92 d1u04a2 not modelled 88.6 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:PIWI domain 93 c2d7dA_ not modelled 88.5 37 PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein b; PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb 94 c3psiA_ not modelled 87.2 14 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451) 95 d1u9la_ not modelled 86.9 16 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:NusA extra C-terminal domains 96 d1jmsa1 not modelled 86.3 7 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 97 d1jx4a2 not modelled 86.1 18 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 98 d2fmpa1 not modelled 85.7 42 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 99 d1jiha2 not modelled 85.2 17 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 100 d2uubb1 not modelled 85.1 19 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 101 d1w9ha1 not modelled 85.1 10 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:PIWI domain 102 d2i5ha1 not modelled 85.0 19 Fold:AF1531-like Superfamily:AF1531-like Family:AF1531-like 103 c2i5hA_ not modelled 85.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1531; PDBTitle: crystal structure of af1531 from archaeoglobus fulgidus,2 pfam duf655 104 d1nzpa_ not modelled 84.8 38 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 105 c3psfA_ not modelled 84.8 15 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) 106 d1kg2a_ not modelled 84.7 20 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 107 d2csba1 not modelled 83.2 23 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 108 d1pu6a_ not modelled 83.1 18 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase III (MagIII) 109 d1lb2b_ not modelled 83.0 12 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 110 c2w42A_ not modelled 82.8 12 PDB header:protein/dna complex Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the structure of a piwi protein from archaeoglobus fulgidus2 complexed with a 16nt dna duplex. 111 c2oh2B_ not modelled 82.6 14 PDB header:transferase/dna Chain: B: PDB Molecule:dna polymerase kappa; PDBTitle: ternary complex of human dna polymerase 112 d1cooa_ not modelled 82.2 12 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 113 d1k1sa2 not modelled 80.7 20 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 114 d1dk2a_ not modelled 79.6 38 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 115 c3qeaZ_ not modelled 78.8 14 PDB header:hydrolase/dna Chain: Z: PDB Molecule:exonuclease 1; PDBTitle: crystal structure of human exonuclease 1 exo1 (wt) in complex with dna2 (complex ii) 116 d2gy9b1 not modelled 78.6 16 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 117 c2kp7A_ not modelled 76.5 21 PDB header:hydrolase Chain: A: PDB Molecule:crossover junction endonuclease mus81; PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a 118 d1keaa_ not modelled 76.3 20 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 119 c3bbnB_ not modelled 75.3 17 PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein s2; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 120 d1doqa_ not modelled 75.2 21 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit