PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1yd2A_

Fold library id	PDB Header	Molecule	Title
c1yd2A_	PDB header: dna binding protein	Chain: A: PDB Molecule: uvrabc system protein c;	PDBTitle: crystal structure of the giy-yig n-terminal endonuclease2 domain of uvrc from thermotoga maritima: point mutant y19f3 bound to the catalytic divalent cation

Links to external resources
Added to library: Tue Mar 16 13:44:53 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K E K I R K K I L L A P E E P G V F I F K N K G V P I Y I G K A K R L S N R L R S Y L N P Q T E K V F R I G E E A D E L E T I V V M N E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S S G G G S
S S
S
S S

. . . . . . . . . 80 . . . . . . . . . 90

Sequence E A F I L E A N L I K K Y R P K Y N V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	E	K	I	R	K	K	I	L	L	A	P	E	E	P	G	V	F	I	F	K	N	K	G	V	P	I	Y	I	G	K	A	K	R	L	S	N	R	L	R	S	Y	L	N	P	Q	T	E	K	V	F	R	I	G	E	E	A	D	E	L	E	T	I	V	V	M	N	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S	S									T	T									S	S							G	G	G	S		S	S											S								S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Sequence	E	A	F	I	L	E	A	N	L	I	K	K	Y	R	P	K	Y	N	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T	S