PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3gocB_

Fold library id	PDB Header	Molecule	Title
c3gocB_	PDB header: hydrolase	Chain: B: PDB Molecule: endonuclease v;	PDBTitle: crystal structure of the endonuclease v (sav1684) from2 streptomyces avermitilis. northeast structural genomics3 consortium target svr196

Links to external resources
Added to library: Sat Aug 28 23:10:22 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T T V R I P A G W P A T E E E A R A V Q D E L R G R V I L D E P G P P P G T G R V T G V D V A Y D D E R D V V V A A A V V L D A A T L D V V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T
S G G G
S
S
T T S S
S S S S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A E A T A V G E V S F P Y V P G L L A F R E I P T V L A A L D A L P C P P G L I V C D G Y G V A H P R R F G L A S H L G V L T G L P T I G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
G G G G T T
S S
S S S S
S S
S T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A K N P F T F S Y E D P G A P R G S A A P L L A G A D E V G R A L R T Q S G V K P V F V S V G H R V D L D H A C A H T L A L T P K Y R I P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T
S S T T
T T
S S T T S
S
T
S S S S S

. . . . . . . . . 220 . . . . . . . .

Sequence T T R R A D S L C R R A L K E A T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	T	V	R	I	P	A	G	W	P	A	T	E	E	E	A	R	A	V	Q	D	E	L	R	G	R	V	I	L	D	E	P	G	P	P	P	G	T	G	R	V	T	G	V	D	V	A	Y	D	D	E	R	D	V	V	V	A	A	A	V	V	L	D	A	A	T	L	D	V	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B				T	T				S												G	G	G				S				S		T	T	S	S											S	S	S	S											T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	E	A	T	A	V	G	E	V	S	F	P	Y	V	P	G	L	L	A	F	R	E	I	P	T	V	L	A	A	L	D	A	L	P	C	P	P	G	L	I	V	C	D	G	Y	G	V	A	H	P	R	R	F	G	L	A	S	H	L	G	V	L	T	G	L	P	T	I	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S				T	T		G	G	G	G	T										T		S	S			S	S				S	S		S	S		S	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	K	N	P	F	T	F	S	Y	E	D	P	G	A	P	R	G	S	A	A	P	L	L	A	G	A	D	E	V	G	R	A	L	R	T	Q	S	G	V	K	P	V	F	V	S	V	G	H	R	V	D	L	D	H	A	C	A	H	T	L	A	L	T	P	K	Y	R	I	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S		T	T								S	S	T	T								T	T									S	S	T	T	S										S													T		S	S	S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Sequence	T	T	R	R	A	D	S	L	C	R	R	A	L	K	E	A	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)