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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c2oh2B_

Fold library idPDB HeaderMoleculeTitle
c2oh2B_PDB header: transferase/dnaChain: B: PDB Molecule: dna polymerase kappa;PDBTitle: ternary complex of human dna polymerase


Added to library: Tue Mar 16 12:03:03 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFA
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Known secondary structure (DSSP)




SS

S

STT
T

 .........80.........90.........100.........110.........120.........130.........140
Sequence MELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRAAMPGFIAKRL
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Known secondary structure (DSSP) T


S

TTTTTS
GGGSSS

SS

SSTTTTT

TT

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence CPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKNSVVFG
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Known secondary structure (DSSP)
TT




TT

B
SSS
TTS

TTTSB






B

 .........220.........230.........240.........250.........260.........270.........280
Sequence TSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGI
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Known secondary structure (DSSP) SSS

SSTTT
SS


SSTT
BSTTSTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence GKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINK
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Known secondary structure (DSSP)
TT

BTS
T



S









 .........360.........370.........380.........390.........400.........410.........420
Sequence AEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEID
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Known secondary structure (DSSP) TTTTT

TT




S
 .........430.........440
Sequence ADFPHPLRLRLMGVRISSFP
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Known secondary structure (DSSP) TTTTS






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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